miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
141 5' -58.6 AC_000006.1 + 11689 0.66 0.421382
Target:  5'- --cGCGCCGGCUCGGCUgccaAUGCaGgUCc -3'
miRNA:   3'- agaUGCGGUUGAGCCGGg---UGCG-CgAG- -5'
141 5' -58.6 AC_000006.1 + 6823 0.66 0.402422
Target:  5'- cCUACGCgcacuucauccgCGACUCGGUCCGCuuGCc- -3'
miRNA:   3'- aGAUGCG------------GUUGAGCCGGGUGcgCGag -5'
141 5' -58.6 AC_000006.1 + 12743 0.66 0.393147
Target:  5'- -aUGCGCUccucCUCGGCCgACaGCGCg- -3'
miRNA:   3'- agAUGCGGuu--GAGCCGGgUG-CGCGag -5'
141 5' -58.6 AC_000006.1 + 9954 0.66 0.375019
Target:  5'- aCUACGUCuucGACUCGcGCgCCuucuCGCgGCUCa -3'
miRNA:   3'- aGAUGCGG---UUGAGC-CG-GGu---GCG-CGAG- -5'
141 5' -58.6 AC_000006.1 + 10958 0.66 0.375019
Target:  5'- --cGCGCUGGCgguccaGGCCCuCGCGCa- -3'
miRNA:   3'- agaUGCGGUUGag----CCGGGuGCGCGag -5'
141 5' -58.6 AC_000006.1 + 9982 0.67 0.340496
Target:  5'- --aGCgGCCAGCgcugggUGGCCgGCGCGCcCg -3'
miRNA:   3'- agaUG-CGGUUGa-----GCCGGgUGCGCGaG- -5'
141 5' -58.6 AC_000006.1 + 11586 0.67 0.340496
Target:  5'- cUCgcgguCGCuCAGCUCGcGCCgCcggcuCGCGCUCa -3'
miRNA:   3'- -AGau---GCG-GUUGAGC-CGG-Gu----GCGCGAG- -5'
141 5' -58.6 AC_000006.1 + 12644 0.69 0.271461
Target:  5'- uUCUGCcCCAGCgcgCGGCUCACGCu--- -3'
miRNA:   3'- -AGAUGcGGUUGa--GCCGGGUGCGcgag -5'
141 5' -58.6 AC_000006.1 + 16802 0.69 0.251088
Target:  5'- cCgcCGCCGGCggCGGgCCAUGCGCa- -3'
miRNA:   3'- aGauGCGGUUGa-GCCgGGUGCGCGag -5'
141 5' -58.6 AC_000006.1 + 22317 0.69 0.244583
Target:  5'- --cGCGUCGACagCGGCCUGCGCgaugcuuacaaGCUCa -3'
miRNA:   3'- agaUGCGGUUGa-GCCGGGUGCG-----------CGAG- -5'
141 5' -58.6 AC_000006.1 + 12115 0.69 0.24394
Target:  5'- --cACGUUuguGCUguuguagCGGCCUACGCGCUCc -3'
miRNA:   3'- agaUGCGGu--UGA-------GCCGGGUGCGCGAG- -5'
141 5' -58.6 AC_000006.1 + 23214 0.73 0.145732
Target:  5'- --cGCGCCAACcgcaccCGcGCCgACGCGCUCc -3'
miRNA:   3'- agaUGCGGUUGa-----GC-CGGgUGCGCGAG- -5'
141 5' -58.6 AC_000006.1 + 9704 0.77 0.069016
Target:  5'- --aGCGCCAGgUCGGCgaCgACGCGCUCg -3'
miRNA:   3'- agaUGCGGUUgAGCCG--GgUGCGCGAG- -5'
141 5' -58.6 AC_000006.1 + 20415 1.1 0.000198
Target:  5'- uUCUACGCCAACUCGGCCCACGCGCUCg -3'
miRNA:   3'- -AGAUGCGGUUGAGCCGGGUGCGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.