miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1410 3' -58.7 NC_001335.1 + 2873 0.66 0.498582
Target:  5'- gACUGGCAGa-UGGCC-CGaCucGCCCu -3'
miRNA:   3'- -UGACCGUCaaGCCGGuGCgGuuCGGG- -5'
1410 3' -58.7 NC_001335.1 + 1717 0.66 0.498582
Target:  5'- --cGGCAuGUaCGGCgGCaCCAAGCUCu -3'
miRNA:   3'- ugaCCGU-CAaGCCGgUGcGGUUCGGG- -5'
1410 3' -58.7 NC_001335.1 + 350 0.66 0.497559
Target:  5'- --cGGCAaccgccggaucucaaGGCCGCGCCAgugcgcGGCCCu -3'
miRNA:   3'- ugaCCGUcaag-----------CCGGUGCGGU------UCGGG- -5'
1410 3' -58.7 NC_001335.1 + 17149 0.66 0.4884
Target:  5'- cGCUGGCGa--CGGCCcucgGCCAGGUCg -3'
miRNA:   3'- -UGACCGUcaaGCCGGug--CGGUUCGGg -5'
1410 3' -58.7 NC_001335.1 + 29268 0.66 0.478317
Target:  5'- cCUGGUAGUcgacugaGGCCAucacauCGCCuGGCUCa -3'
miRNA:   3'- uGACCGUCAag-----CCGGU------GCGGuUCGGG- -5'
1410 3' -58.7 NC_001335.1 + 24088 0.66 0.468337
Target:  5'- cCUGGCGG--CGGCgGgGCUGGuGCCCa -3'
miRNA:   3'- uGACCGUCaaGCCGgUgCGGUU-CGGG- -5'
1410 3' -58.7 NC_001335.1 + 37118 0.67 0.458465
Target:  5'- cGCUGGuCAGga-GGCaACGCCAGcuCCCa -3'
miRNA:   3'- -UGACC-GUCaagCCGgUGCGGUUc-GGG- -5'
1410 3' -58.7 NC_001335.1 + 34415 0.67 0.458465
Target:  5'- cGCUGGUAGU--GGaCCGUGCCGGGUCg -3'
miRNA:   3'- -UGACCGUCAagCC-GGUGCGGUUCGGg -5'
1410 3' -58.7 NC_001335.1 + 25855 0.67 0.448706
Target:  5'- aGCUGGCug--CGGCCaACGggguGGCCCa -3'
miRNA:   3'- -UGACCGucaaGCCGG-UGCggu-UCGGG- -5'
1410 3' -58.7 NC_001335.1 + 4834 0.67 0.439062
Target:  5'- --aGGCGGgccagCGGCCuuGCCGaucaAGCCg -3'
miRNA:   3'- ugaCCGUCaa---GCCGGugCGGU----UCGGg -5'
1410 3' -58.7 NC_001335.1 + 15216 0.67 0.439062
Target:  5'- --aGGC-GUUcCGGCUgauCGCCAcgaAGCCCa -3'
miRNA:   3'- ugaCCGuCAA-GCCGGu--GCGGU---UCGGG- -5'
1410 3' -58.7 NC_001335.1 + 38271 0.67 0.429538
Target:  5'- aACcGGCuuAGUuccgcUCGGCCG-GCC-AGCCCg -3'
miRNA:   3'- -UGaCCG--UCA-----AGCCGGUgCGGuUCGGG- -5'
1410 3' -58.7 NC_001335.1 + 14294 0.67 0.426705
Target:  5'- --cGGCGG-UCGGCUACGUguacgucggugcugCAGGCaCCg -3'
miRNA:   3'- ugaCCGUCaAGCCGGUGCG--------------GUUCG-GG- -5'
1410 3' -58.7 NC_001335.1 + 45200 0.67 0.421071
Target:  5'- cCUGGCGGgcggucuccuucaggUCGGaCUuCGCCGacagcGGCCCg -3'
miRNA:   3'- uGACCGUCa--------------AGCC-GGuGCGGU-----UCGGG- -5'
1410 3' -58.7 NC_001335.1 + 46921 0.67 0.420137
Target:  5'- --cGGCGuacCGGCCACGUCuucGGCCUg -3'
miRNA:   3'- ugaCCGUcaaGCCGGUGCGGu--UCGGG- -5'
1410 3' -58.7 NC_001335.1 + 32699 0.68 0.400806
Target:  5'- aACUcGGCGGUguugaccUUGGCCAgcacgucgGCCGGGUCCg -3'
miRNA:   3'- -UGA-CCGUCA-------AGCCGGUg-------CGGUUCGGG- -5'
1410 3' -58.7 NC_001335.1 + 28209 0.68 0.383812
Target:  5'- uGCUGGCAGUacaacuUUGGCUugugGCauuAGCCCu -3'
miRNA:   3'- -UGACCGUCA------AGCCGGug--CGgu-UCGGG- -5'
1410 3' -58.7 NC_001335.1 + 23254 0.68 0.383812
Target:  5'- cCUGGCcgagguugcGGUUaCGaGCCugGCCuucccAGCCCc -3'
miRNA:   3'- uGACCG---------UCAA-GC-CGGugCGGu----UCGGG- -5'
1410 3' -58.7 NC_001335.1 + 24135 0.68 0.383812
Target:  5'- uGCUGGCGcucgCGGCCAgGCguGGUUCu -3'
miRNA:   3'- -UGACCGUcaa-GCCGGUgCGguUCGGG- -5'
1410 3' -58.7 NC_001335.1 + 4060 0.68 0.366447
Target:  5'- cGCUGGCAGUU-GGUucaCAUGCCGaccggcgaggcAGCCg -3'
miRNA:   3'- -UGACCGUCAAgCCG---GUGCGGU-----------UCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.