miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14100 3' -52.4 NC_003521.1 + 169120 0.72 0.860415
Target:  5'- ---uUAG-CGGGGGCcaGCGACUUG-GAg -3'
miRNA:   3'- auuuAUCuGCCCCCG--CGCUGAACaCU- -5'
14100 3' -52.4 NC_003521.1 + 124101 0.66 0.995355
Target:  5'- --cGUGGGCGGGaagcaGCGCGucGCUgugGUGAu -3'
miRNA:   3'- auuUAUCUGCCCc----CGCGC--UGAa--CACU- -5'
14100 3' -52.4 NC_003521.1 + 38432 0.66 0.995355
Target:  5'- -------cCGGGGGCGCGGgUgacacggGUGAc -3'
miRNA:   3'- auuuaucuGCCCCCGCGCUgAa------CACU- -5'
14100 3' -52.4 NC_003521.1 + 73139 0.66 0.993784
Target:  5'- -----cGGCGGGGGCaGCGGCg----- -3'
miRNA:   3'- auuuauCUGCCCCCG-CGCUGaacacu -5'
14100 3' -52.4 NC_003521.1 + 150641 0.66 0.993784
Target:  5'- ----cAGGCGGGGGCgugcGCGACg----- -3'
miRNA:   3'- auuuaUCUGCCCCCG----CGCUGaacacu -5'
14100 3' -52.4 NC_003521.1 + 103112 0.66 0.991812
Target:  5'- cGGAUAGgACGcGGGGUGaGGCUgGUGGg -3'
miRNA:   3'- aUUUAUC-UGC-CCCCGCgCUGAaCACU- -5'
14100 3' -52.4 NC_003521.1 + 135412 0.66 0.990655
Target:  5'- ----cGGGCGGGaaccaaucacccGGCGCGAUUUGg-- -3'
miRNA:   3'- auuuaUCUGCCC------------CCGCGCUGAACacu -5'
14100 3' -52.4 NC_003521.1 + 120898 0.67 0.98796
Target:  5'- cAGGUGGuCGGGGGCgGCuGCUUGc-- -3'
miRNA:   3'- aUUUAUCuGCCCCCG-CGcUGAACacu -5'
14100 3' -52.4 NC_003521.1 + 98426 0.67 0.982836
Target:  5'- -cGGUGGugGcGGGGCG-GGCguacgGUGAg -3'
miRNA:   3'- auUUAUCugC-CCCCGCgCUGaa---CACU- -5'
14100 3' -52.4 NC_003521.1 + 118716 0.72 0.882445
Target:  5'- --cAUGGGCGaGGGGCGCGGCa----- -3'
miRNA:   3'- auuUAUCUGC-CCCCGCGCUGaacacu -5'
14100 3' -52.4 NC_003521.1 + 119454 0.7 0.940938
Target:  5'- -----cGAUGGaGGCGCGACagUGUGAa -3'
miRNA:   3'- auuuauCUGCCcCCGCGCUGa-ACACU- -5'
14100 3' -52.4 NC_003521.1 + 173416 0.7 0.945478
Target:  5'- --cGUGGA-GGGGGCGCuGCUgGUGGu -3'
miRNA:   3'- auuUAUCUgCCCCCGCGcUGAaCACU- -5'
14100 3' -52.4 NC_003521.1 + 71279 0.69 0.957698
Target:  5'- ----gAGGCGGGGGCcGCGGCa----- -3'
miRNA:   3'- auuuaUCUGCCCCCG-CGCUGaacacu -5'
14100 3' -52.4 NC_003521.1 + 138707 0.68 0.970872
Target:  5'- ---cUGGGCGGcacGGGCGCuGGCUgGUGGu -3'
miRNA:   3'- auuuAUCUGCC---CCCGCG-CUGAaCACU- -5'
14100 3' -52.4 NC_003521.1 + 238803 0.68 0.978603
Target:  5'- ----cGGACGaguuguGGGGCGCGACgccGUGu -3'
miRNA:   3'- auuuaUCUGC------CCCCGCGCUGaa-CACu -5'
14100 3' -52.4 NC_003521.1 + 156898 0.66 0.994615
Target:  5'- -cGAUGGcACGGGGG-GCGACggGccgGAg -3'
miRNA:   3'- auUUAUC-UGCCCCCgCGCUGaaCa--CU- -5'
14100 3' -52.4 NC_003521.1 + 37391 0.72 0.860415
Target:  5'- cGAGgcGGCGGGGGCGCccgGGcCUUGUGc -3'
miRNA:   3'- aUUUauCUGCCCCCGCG---CU-GAACACu -5'
14100 3' -52.4 NC_003521.1 + 123221 0.71 0.914656
Target:  5'- ----aGGACGGGGGCGgCGGuagGUGGu -3'
miRNA:   3'- auuuaUCUGCCCCCGC-GCUgaaCACU- -5'
14100 3' -52.4 NC_003521.1 + 155250 0.7 0.931144
Target:  5'- -uGGUGGugGGGGGCgGCGGCg----- -3'
miRNA:   3'- auUUAUCugCCCCCG-CGCUGaacacu -5'
14100 3' -52.4 NC_003521.1 + 162252 0.69 0.967898
Target:  5'- gGGGUGGgcgucaACGGGGGUGCGACa----- -3'
miRNA:   3'- aUUUAUC------UGCCCCCGCGCUGaacacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.