miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14100 5' -59.1 NC_003521.1 + 192398 0.66 0.882578
Target:  5'- aGCUgACggugcugUUCCaGCGCC-UCGCCgAGa -3'
miRNA:   3'- -CGGgUGa------AAGGcCGCGGuAGCGGgUC- -5'
14100 5' -59.1 NC_003521.1 + 117616 0.66 0.882578
Target:  5'- cGCCCcCguccuacCCGGCGCCGUaugcgGCCUAc -3'
miRNA:   3'- -CGGGuGaaa----GGCCGCGGUAg----CGGGUc -5'
14100 5' -59.1 NC_003521.1 + 229256 0.66 0.882578
Target:  5'- cCCCGCagagUCCGGCGCaCGacggCGCCgGa -3'
miRNA:   3'- cGGGUGaa--AGGCCGCG-GUa---GCGGgUc -5'
14100 5' -59.1 NC_003521.1 + 103943 0.66 0.882578
Target:  5'- -aCCGCgaacaCCGGCGCCAccCGCCgCGa -3'
miRNA:   3'- cgGGUGaaa--GGCCGCGGUa-GCGG-GUc -5'
14100 5' -59.1 NC_003521.1 + 154755 0.66 0.882578
Target:  5'- gGCCUACUggCCGGU--CAUCGCCg-- -3'
miRNA:   3'- -CGGGUGAaaGGCCGcgGUAGCGGguc -5'
14100 5' -59.1 NC_003521.1 + 127733 0.66 0.882578
Target:  5'- cGCUC-CUgcacCCGGCgGCCGUCugcgccucguaGCCCGGa -3'
miRNA:   3'- -CGGGuGAaa--GGCCG-CGGUAG-----------CGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 687 0.66 0.882578
Target:  5'- aGCCagCGCUUUCC-GCGCC--CGCCgGGa -3'
miRNA:   3'- -CGG--GUGAAAGGcCGCGGuaGCGGgUC- -5'
14100 5' -59.1 NC_003521.1 + 200914 0.66 0.882578
Target:  5'- aGCCagCGCUUUCC-GCGCC--CGCCgGGa -3'
miRNA:   3'- -CGG--GUGAAAGGcCGCGGuaGCGGgUC- -5'
14100 5' -59.1 NC_003521.1 + 45650 0.66 0.875832
Target:  5'- gGCuCCGCggggUCCGGCGCaCAccCGCUauCAGg -3'
miRNA:   3'- -CG-GGUGaa--AGGCCGCG-GUa-GCGG--GUC- -5'
14100 5' -59.1 NC_003521.1 + 86521 0.66 0.875832
Target:  5'- uCCCGCgucggccCCGGaCGCCGUgcCGCCCc- -3'
miRNA:   3'- cGGGUGaaa----GGCC-GCGGUA--GCGGGuc -5'
14100 5' -59.1 NC_003521.1 + 77080 0.66 0.875832
Target:  5'- aGCgCCGCUguugccgCCGGCGCCGcUCauCCCGa -3'
miRNA:   3'- -CG-GGUGAaa-----GGCCGCGGU-AGc-GGGUc -5'
14100 5' -59.1 NC_003521.1 + 233162 0.66 0.875832
Target:  5'- cGCCgGCUUcagcgUCUGGCauCUAUUGUCCAGg -3'
miRNA:   3'- -CGGgUGAA-----AGGCCGc-GGUAGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 5691 0.66 0.875832
Target:  5'- cGUCCGCggggaaCgGGCGCCGUCaCCgGGg -3'
miRNA:   3'- -CGGGUGaaa---GgCCGCGGUAGcGGgUC- -5'
14100 5' -59.1 NC_003521.1 + 69930 0.66 0.868889
Target:  5'- cGCCUGCUUcgcgacgCCGGaCGCCugaccacccgCGCCCGc -3'
miRNA:   3'- -CGGGUGAAa------GGCC-GCGGua--------GCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 239910 0.66 0.868889
Target:  5'- aGCCaugaACg--CCGuGCGCCAgauggUGCCCAu -3'
miRNA:   3'- -CGGg---UGaaaGGC-CGCGGUa----GCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 223759 0.66 0.868889
Target:  5'- uCCCACUcgUCguccucgcuguCGGCGCCGUuacCGCCguGg -3'
miRNA:   3'- cGGGUGAa-AG-----------GCCGCGGUA---GCGGguC- -5'
14100 5' -59.1 NC_003521.1 + 56033 0.66 0.868889
Target:  5'- cGgCCACcagggcgUCCaGGCGCgCGUUGcCCCAGa -3'
miRNA:   3'- -CgGGUGaa-----AGG-CCGCG-GUAGC-GGGUC- -5'
14100 5' -59.1 NC_003521.1 + 39683 0.66 0.868889
Target:  5'- aGCCaugaACg--CCGuGCGCCAgauggUGCCCAu -3'
miRNA:   3'- -CGGg---UGaaaGGC-CGCGGUa----GCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 211392 0.66 0.868889
Target:  5'- gGCCCACgcgCUGGUuguaGCUGUCaccgggGCCCGGa -3'
miRNA:   3'- -CGGGUGaaaGGCCG----CGGUAG------CGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 24631 0.66 0.868889
Target:  5'- cCCCGCg--CCGGUGCuCAgCGCCUu- -3'
miRNA:   3'- cGGGUGaaaGGCCGCG-GUaGCGGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.