miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14101 3' -56.7 NC_003521.1 + 240562 0.7 0.825939
Target:  5'- cCGCUGcGGGUcCCGGGGGGuGGGGGgGUGu -3'
miRNA:   3'- -GCGGC-CCUA-GGCUCCUC-UUCCUgUAC- -5'
14101 3' -56.7 NC_003521.1 + 236330 0.67 0.92121
Target:  5'- -aUCGGGGcCCGGacGGGGGAGGACGa- -3'
miRNA:   3'- gcGGCCCUaGGCU--CCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 217658 0.66 0.956983
Target:  5'- uGgCGGGAUCCGGGGGuuuccacGGGCGc- -3'
miRNA:   3'- gCgGCCCUAGGCUCCUcuu----CCUGUac -5'
14101 3' -56.7 NC_003521.1 + 212915 0.66 0.940834
Target:  5'- -uCUGGuGUCCGAGGAGGcgcuguaagAGGACAa- -3'
miRNA:   3'- gcGGCCcUAGGCUCCUCU---------UCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 209576 0.67 0.936258
Target:  5'- gGCgGGGGUCCGGGGGcgcacguagcGGAGGuaaACAc- -3'
miRNA:   3'- gCGgCCCUAGGCUCCU----------CUUCC---UGUac -5'
14101 3' -56.7 NC_003521.1 + 206150 0.68 0.897454
Target:  5'- gGCCGGGGaaaggccUCCGAgaagcccaGGAGcAGGGCGg- -3'
miRNA:   3'- gCGGCCCU-------AGGCU--------CCUCuUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 192422 0.74 0.611697
Target:  5'- uCGCCgagacucgaGGGAgaCGaAGGAGAGGGGCAUGg -3'
miRNA:   3'- -GCGG---------CCCUagGC-UCCUCUUCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 190689 0.68 0.878485
Target:  5'- aCGCCGGGGa--GAGGAGAcGGGAgGa- -3'
miRNA:   3'- -GCGGCCCUaggCUCCUCU-UCCUgUac -5'
14101 3' -56.7 NC_003521.1 + 186535 0.68 0.871545
Target:  5'- aGCgGGGGcUCCGuGGGAGGcAGGGCcgGc -3'
miRNA:   3'- gCGgCCCU-AGGC-UCCUCU-UCCUGuaC- -5'
14101 3' -56.7 NC_003521.1 + 175915 0.7 0.800859
Target:  5'- uGCUGGGGaccuggcCCGAGGAGccggagGAGGACAg- -3'
miRNA:   3'- gCGGCCCUa------GGCUCCUC------UUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 172418 0.69 0.841859
Target:  5'- uCGCCgcGGGAcCCGAGGcGGAGGAgGa- -3'
miRNA:   3'- -GCGG--CCCUaGGCUCCuCUUCCUgUac -5'
14101 3' -56.7 NC_003521.1 + 172252 0.67 0.910078
Target:  5'- uGCgGuaGUCCGAGGAGcGGGGGCAc- -3'
miRNA:   3'- gCGgCccUAGGCUCCUC-UUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 167108 0.72 0.717928
Target:  5'- aGCCGGGGaCUGAGGAGccucccuGGGGACu-- -3'
miRNA:   3'- gCGGCCCUaGGCUCCUC-------UUCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 164450 0.71 0.765488
Target:  5'- gCGCCGcGGGcCUGAGcauGAAGGGCGUGg -3'
miRNA:   3'- -GCGGC-CCUaGGCUCcu-CUUCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 164027 0.66 0.956621
Target:  5'- -aCgGGGAUCUggagaugauagugGAGGAgGAAGGugGUGg -3'
miRNA:   3'- gcGgCCCUAGG-------------CUCCU-CUUCCugUAC- -5'
14101 3' -56.7 NC_003521.1 + 156695 0.7 0.807679
Target:  5'- gCGCuCGGGGaaaaggugcuggCCGGGGAGGAGcGCAUGu -3'
miRNA:   3'- -GCG-GCCCUa-----------GGCUCCUCUUCcUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 155182 0.7 0.792208
Target:  5'- gGCCGcGGcugCCGGGGGGGAGGuGCAc- -3'
miRNA:   3'- gCGGC-CCua-GGCUCCUCUUCC-UGUac -5'
14101 3' -56.7 NC_003521.1 + 151111 0.66 0.956983
Target:  5'- cCGCUGGGGgauggCGGGGGGAauaugGGGACu-- -3'
miRNA:   3'- -GCGGCCCUag---GCUCCUCU-----UCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 150537 0.67 0.936258
Target:  5'- aGCCguGGGGUCCGGcGGuGGuggugcGGGugGUGg -3'
miRNA:   3'- gCGG--CCCUAGGCU-CCuCU------UCCugUAC- -5'
14101 3' -56.7 NC_003521.1 + 149430 0.68 0.871545
Target:  5'- gGCCGGGAUuuGGGucGggGGuCcgGg -3'
miRNA:   3'- gCGGCCCUAggCUCcuCuuCCuGuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.