miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14101 3' -56.7 NC_003521.1 + 64409 0.68 0.889817
Target:  5'- aGCgCGGGcugaacaaacuauaCGAGGAGGAGGACGa- -3'
miRNA:   3'- gCG-GCCCuag-----------GCUCCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 64674 0.72 0.699702
Target:  5'- -aCCGGGcUCCGAGGAGAuGGAgAa- -3'
miRNA:   3'- gcGGCCCuAGGCUCCUCUuCCUgUac -5'
14101 3' -56.7 NC_003521.1 + 66380 0.66 0.952108
Target:  5'- aCGCCcagaGGAUCaugaaaacucuggaCGAGGAGcGGGACAa- -3'
miRNA:   3'- -GCGGc---CCUAG--------------GCUCCUCuUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 66997 0.66 0.940834
Target:  5'- aGCCaGaGUCUGAGGGGGAGGuGCAc- -3'
miRNA:   3'- gCGGcCcUAGGCUCCUCUUCC-UGUac -5'
14101 3' -56.7 NC_003521.1 + 71445 0.69 0.841859
Target:  5'- gGCgGGGAUCgCGGGG-GAA-GACAUGc -3'
miRNA:   3'- gCGgCCCUAG-GCUCCuCUUcCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 87355 0.72 0.709321
Target:  5'- aGCCGGagcCCGAGGAGGAGGcCGa- -3'
miRNA:   3'- gCGGCCcuaGGCUCCUCUUCCuGUac -5'
14101 3' -56.7 NC_003521.1 + 89639 0.67 0.910078
Target:  5'- cCGUCGcGG--CCGAGGAGcAGGACGg- -3'
miRNA:   3'- -GCGGC-CCuaGGCUCCUCuUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 90874 0.76 0.496715
Target:  5'- gGCCGaGGGggaCGGGGAGggGGACGa- -3'
miRNA:   3'- gCGGC-CCUag-GCUCCUCuuCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 92078 0.66 0.953265
Target:  5'- gGaCCGGGggUCGGGGGGugcgcAGGGCGg- -3'
miRNA:   3'- gC-GGCCCuaGGCUCCUCu----UCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 98228 0.66 0.940834
Target:  5'- gGCgUGGGAggCGGGGAGGcgGGGGCGg- -3'
miRNA:   3'- gCG-GCCCUagGCUCCUCU--UCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 98824 0.85 0.165262
Target:  5'- gGCCGGGAUCUGAGGugacggcgAGGAGGugAUGg -3'
miRNA:   3'- gCGGCCCUAGGCUCC--------UCUUCCugUAC- -5'
14101 3' -56.7 NC_003521.1 + 98937 0.66 0.940834
Target:  5'- uCG-CGGGA-CCGAgcGGAGAcGGGugGUGg -3'
miRNA:   3'- -GCgGCCCUaGGCU--CCUCU-UCCugUAC- -5'
14101 3' -56.7 NC_003521.1 + 99032 0.67 0.92121
Target:  5'- gCGCCGGcuccgggccGGUCCGAGGu-AGGGACuuUGa -3'
miRNA:   3'- -GCGGCC---------CUAGGCUCCucUUCCUGu-AC- -5'
14101 3' -56.7 NC_003521.1 + 102054 0.72 0.706441
Target:  5'- gGCCGGGuugagcacuacgguGUUgGcGGGGAAGGGCGUGa -3'
miRNA:   3'- gCGGCCC--------------UAGgCuCCUCUUCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 103597 0.66 0.956621
Target:  5'- gGCCGGuGcgCgGGGGAucugaaaGAAGGGCGUc -3'
miRNA:   3'- gCGGCC-CuaGgCUCCU-------CUUCCUGUAc -5'
14101 3' -56.7 NC_003521.1 + 109786 0.67 0.926446
Target:  5'- cCGCCGccg-CCGcccAGGAGAcGGGACGUGg -3'
miRNA:   3'- -GCGGCccuaGGC---UCCUCU-UCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 113365 0.74 0.562959
Target:  5'- gGCCGGGGg-CGAGGAGGAGGGu--- -3'
miRNA:   3'- gCGGCCCUagGCUCCUCUUCCUguac -5'
14101 3' -56.7 NC_003521.1 + 113548 0.67 0.935788
Target:  5'- gCGCCGGGAcgaccaccagCgCGAGGAGGacgcgguGGGGC-UGg -3'
miRNA:   3'- -GCGGCCCUa---------G-GCUCCUCU-------UCCUGuAC- -5'
14101 3' -56.7 NC_003521.1 + 113846 0.66 0.940834
Target:  5'- uGCUGGGGuuucuUCCGAGcGuGgcGGugGUGu -3'
miRNA:   3'- gCGGCCCU-----AGGCUC-CuCuuCCugUAC- -5'
14101 3' -56.7 NC_003521.1 + 115699 0.66 0.948931
Target:  5'- aGCCGGuGUCCGuacagcgugcccaGGGAGAagAGGAUGUu -3'
miRNA:   3'- gCGGCCcUAGGC-------------UCCUCU--UCCUGUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.