miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14101 5' -50.5 NC_003521.1 + 183652 0.66 0.999284
Target:  5'- aACACGgCUCggaccuUUCUCUUUUGCAGaCCg -3'
miRNA:   3'- cUGUGCaGAG------AGGAGAGAAUGUCaGG- -5'
14101 5' -50.5 NC_003521.1 + 53565 0.66 0.999284
Target:  5'- -uCGCGUCUCUCUagCUCUccCGGggCCg -3'
miRNA:   3'- cuGUGCAGAGAGGa-GAGAauGUCa-GG- -5'
14101 5' -50.5 NC_003521.1 + 162626 0.66 0.999126
Target:  5'- cGGC-CGUUUCUUC-CUCc-ACAGUCCc -3'
miRNA:   3'- -CUGuGCAGAGAGGaGAGaaUGUCAGG- -5'
14101 5' -50.5 NC_003521.1 + 163190 0.66 0.998719
Target:  5'- aACACGUCgaUCCUCUCggcCGGcgCCg -3'
miRNA:   3'- cUGUGCAGagAGGAGAGaauGUCa-GG- -5'
14101 5' -50.5 NC_003521.1 + 207210 0.66 0.998719
Target:  5'- cGGCAuCGUCcuccggUUCCUCUCcucccgUGCGGUCa -3'
miRNA:   3'- -CUGU-GCAGa-----GAGGAGAGa-----AUGUCAGg -5'
14101 5' -50.5 NC_003521.1 + 52855 0.67 0.998161
Target:  5'- cGACugGUcCUCggUCUUCcagCcgUGCAGUCCg -3'
miRNA:   3'- -CUGugCA-GAG--AGGAGa--Ga-AUGUCAGG- -5'
14101 5' -50.5 NC_003521.1 + 27576 0.67 0.997813
Target:  5'- cGACGCGUCggaCUCCga---UGCGGUCUg -3'
miRNA:   3'- -CUGUGCAGa--GAGGagagaAUGUCAGG- -5'
14101 5' -50.5 NC_003521.1 + 227581 0.67 0.997813
Target:  5'- cGAUAcCGUCUCguucCCUUUCagGCGGUaCCa -3'
miRNA:   3'- -CUGU-GCAGAGa---GGAGAGaaUGUCA-GG- -5'
14101 5' -50.5 NC_003521.1 + 171382 0.67 0.997411
Target:  5'- aACACaggaGUUUCUCCUCguUCUgcuccCGGUCCa -3'
miRNA:   3'- cUGUG----CAGAGAGGAG--AGAau---GUCAGG- -5'
14101 5' -50.5 NC_003521.1 + 4332 0.67 0.997411
Target:  5'- uGGCugGUC-CUCCUCggUCUcggACGGaCCg -3'
miRNA:   3'- -CUGugCAGaGAGGAG--AGAa--UGUCaGG- -5'
14101 5' -50.5 NC_003521.1 + 191295 0.68 0.996423
Target:  5'- aGCAUGUCUCUCCagucguUCUCgugAUAGUa- -3'
miRNA:   3'- cUGUGCAGAGAGG------AGAGaa-UGUCAgg -5'
14101 5' -50.5 NC_003521.1 + 69986 0.69 0.990276
Target:  5'- cGACGCGcgUCUCgUCg--UGCAGUCCc -3'
miRNA:   3'- -CUGUGCagAGAGgAGagaAUGUCAGG- -5'
14101 5' -50.5 NC_003521.1 + 136183 0.69 0.98687
Target:  5'- cGGCgGCGUCgagcaugaaggcgCUCUUCUC--GCAGUCCa -3'
miRNA:   3'- -CUG-UGCAGa------------GAGGAGAGaaUGUCAGG- -5'
14101 5' -50.5 NC_003521.1 + 124628 0.7 0.980131
Target:  5'- cGGCgACGUCUCccUCCUCUCc-GCGG-CCa -3'
miRNA:   3'- -CUG-UGCAGAG--AGGAGAGaaUGUCaGG- -5'
14101 5' -50.5 NC_003521.1 + 176395 0.7 0.980131
Target:  5'- cGCGCGUCUCgUCCUCcUCcucgUAUAGUUUg -3'
miRNA:   3'- cUGUGCAGAG-AGGAG-AGa---AUGUCAGG- -5'
14101 5' -50.5 NC_003521.1 + 73164 0.72 0.948387
Target:  5'- aGCACGUCaCUCCUCUCcu-C-GUCCa -3'
miRNA:   3'- cUGUGCAGaGAGGAGAGaauGuCAGG- -5'
14101 5' -50.5 NC_003521.1 + 240189 0.73 0.92406
Target:  5'- gGGCcCGUCcuuUCUCCUC-CUUGCAGUgCg -3'
miRNA:   3'- -CUGuGCAG---AGAGGAGaGAAUGUCAgG- -5'
14101 5' -50.5 NC_003521.1 + 199867 0.73 0.92406
Target:  5'- gGGCcCGUCcuuUCUCCUC-CUUGCAGUgCg -3'
miRNA:   3'- -CUGuGCAG---AGAGGAGaGAAUGUCAgG- -5'
14101 5' -50.5 NC_003521.1 + 27736 0.74 0.886984
Target:  5'- -cCGCGUCUcCUCCUCUauauaaaaCUUGCcGUCCg -3'
miRNA:   3'- cuGUGCAGA-GAGGAGA--------GAAUGuCAGG- -5'
14101 5' -50.5 NC_003521.1 + 138344 0.75 0.857704
Target:  5'- cGACgGCGUCUCgggCCUCUCUaagcacACGGUCUu -3'
miRNA:   3'- -CUG-UGCAGAGa--GGAGAGAa-----UGUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.