miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14105 3' -56 NC_003521.1 + 36381 0.66 0.930389
Target:  5'- cGCGUgCUgcuuuccGUGCUGCuGGCGGCAg -3'
miRNA:   3'- uUGCGgGAaa-----UACGACGcCCGCUGUg -5'
14105 3' -56 NC_003521.1 + 148936 0.66 0.930389
Target:  5'- cAGCGCCgUgcuggcgcgUGUGCUGCuggaGGGCaGCGCc -3'
miRNA:   3'- -UUGCGGgAa--------AUACGACG----CCCGcUGUG- -5'
14105 3' -56 NC_003521.1 + 16035 0.66 0.925164
Target:  5'- cGCGuCCCgcacgacGUGgUGCGGGCGcugcuGCACa -3'
miRNA:   3'- uUGC-GGGaaa----UACgACGCCCGC-----UGUG- -5'
14105 3' -56 NC_003521.1 + 151978 0.66 0.924629
Target:  5'- cACGCCC---GUGCUGUGcuacgacGGCGGCGu -3'
miRNA:   3'- uUGCGGGaaaUACGACGC-------CCGCUGUg -5'
14105 3' -56 NC_003521.1 + 39562 0.67 0.910485
Target:  5'- cGACGCCggccaucugGCUGCGcGGCGugAUg -3'
miRNA:   3'- -UUGCGGgaaaua---CGACGC-CCGCugUG- -5'
14105 3' -56 NC_003521.1 + 239789 0.67 0.910485
Target:  5'- cGACGCCggccaucugGCUGCGcGGCGugAUg -3'
miRNA:   3'- -UUGCGGgaaaua---CGACGC-CCGCugUG- -5'
14105 3' -56 NC_003521.1 + 105653 0.67 0.908087
Target:  5'- --aGCCCagcUcgGggGUGGGCGGCACg -3'
miRNA:   3'- uugCGGGaa-AuaCgaCGCCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 225849 0.67 0.908087
Target:  5'- cGCGCUCgugGUGgUGCGGGC-ACAg -3'
miRNA:   3'- uUGCGGGaaaUACgACGCCCGcUGUg -5'
14105 3' -56 NC_003521.1 + 141953 0.67 0.901931
Target:  5'- gGGCGCCCac----CUGCuGGGCGACGa -3'
miRNA:   3'- -UUGCGGGaaauacGACG-CCCGCUGUg -5'
14105 3' -56 NC_003521.1 + 115839 0.67 0.895547
Target:  5'- aGGCGCUg-----GCUcagGCGGGCGGCGCa -3'
miRNA:   3'- -UUGCGGgaaauaCGA---CGCCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 228576 0.67 0.895547
Target:  5'- aGACGCCCUUgagGUUGUcGGCGugccCGCa -3'
miRNA:   3'- -UUGCGGGAAauaCGACGcCCGCu---GUG- -5'
14105 3' -56 NC_003521.1 + 131307 0.67 0.895547
Target:  5'- cACGCCCUgcucgaGCaGCGGcCGGCGCg -3'
miRNA:   3'- uUGCGGGAaaua--CGaCGCCcGCUGUG- -5'
14105 3' -56 NC_003521.1 + 83870 0.67 0.893587
Target:  5'- -cCGUCCUcgacccagucuucggGUGCaucUGCGGGUGGCGCg -3'
miRNA:   3'- uuGCGGGAaa-------------UACG---ACGCCCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 22402 0.68 0.882106
Target:  5'- -cCGCCgCUgucgcuggccAUGCUGCGcGGCGugGCc -3'
miRNA:   3'- uuGCGG-GAaa--------UACGACGC-CCGCugUG- -5'
14105 3' -56 NC_003521.1 + 116744 0.68 0.881411
Target:  5'- cGGCGCCCUucaaacacguggcUUGUGCagcGUGGGCcgccgccgcGGCACg -3'
miRNA:   3'- -UUGCGGGA-------------AAUACGa--CGCCCG---------CUGUG- -5'
14105 3' -56 NC_003521.1 + 95874 0.68 0.875058
Target:  5'- --aGCCCUUcGUcGCgagccaGCGcGGCGACGCg -3'
miRNA:   3'- uugCGGGAAaUA-CGa-----CGC-CCGCUGUG- -5'
14105 3' -56 NC_003521.1 + 55735 0.68 0.875058
Target:  5'- cAGCGCCUccca-GCgcGCGGGCGGCAg -3'
miRNA:   3'- -UUGCGGGaaauaCGa-CGCCCGCUGUg -5'
14105 3' -56 NC_003521.1 + 168741 0.68 0.867797
Target:  5'- aAACGCCgacgcgGUUGCGGGUcgGACGCg -3'
miRNA:   3'- -UUGCGGgaaauaCGACGCCCG--CUGUG- -5'
14105 3' -56 NC_003521.1 + 5846 0.68 0.867797
Target:  5'- cGGgGCCCuUUUAUGCgaucCGGGCGcggGCACa -3'
miRNA:   3'- -UUgCGGG-AAAUACGac--GCCCGC---UGUG- -5'
14105 3' -56 NC_003521.1 + 76370 0.68 0.867797
Target:  5'- cACGCCCUUcAUGCUcagGCccGCGGCGCc -3'
miRNA:   3'- uUGCGGGAAaUACGA---CGccCGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.