miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14105 5' -56.3 NC_003521.1 + 107443 0.66 0.92695
Target:  5'- -aGCGCgGaCCGCCGCGCUgugcCGGcGGAc -3'
miRNA:   3'- aaUGUGgU-GGCGGUGCGA----GCCuUCUu -5'
14105 5' -56.3 NC_003521.1 + 13875 0.66 0.926423
Target:  5'- -gGCGgCGCCGCCAuggauuuCGC-CGGggGGc -3'
miRNA:   3'- aaUGUgGUGGCGGU-------GCGaGCCuuCUu -5'
14105 5' -56.3 NC_003521.1 + 192034 0.66 0.921577
Target:  5'- cUGCACCGCCGgCGUGCgCGGcAGAc -3'
miRNA:   3'- aAUGUGGUGGCgGUGCGaGCCuUCUu -5'
14105 5' -56.3 NC_003521.1 + 169422 0.66 0.921577
Target:  5'- -gGgGCCGCCGCCuCGCUcacgCGGAcGAc -3'
miRNA:   3'- aaUgUGGUGGCGGuGCGA----GCCUuCUu -5'
14105 5' -56.3 NC_003521.1 + 104656 0.66 0.921577
Target:  5'- -gACGCCGCCGCCuc-UUCGGAAa-- -3'
miRNA:   3'- aaUGUGGUGGCGGugcGAGCCUUcuu -5'
14105 5' -56.3 NC_003521.1 + 213299 0.66 0.921577
Target:  5'- cUACGCCACCGUgGgCGCcUCGGGc--- -3'
miRNA:   3'- aAUGUGGUGGCGgU-GCG-AGCCUucuu -5'
14105 5' -56.3 NC_003521.1 + 115844 0.66 0.921577
Target:  5'- -cGCugCugCGCCGCGU--GGAGGGc -3'
miRNA:   3'- aaUGugGugGCGGUGCGagCCUUCUu -5'
14105 5' -56.3 NC_003521.1 + 27762 0.66 0.921577
Target:  5'- ---uGCCGuCCGCCgaGCGCggaGGAAGAAa -3'
miRNA:   3'- aaugUGGU-GGCGG--UGCGag-CCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 191186 0.66 0.915972
Target:  5'- -aGCGCCACUGCCcccCGCU-GGAccAGGAg -3'
miRNA:   3'- aaUGUGGUGGCGGu--GCGAgCCU--UCUU- -5'
14105 5' -56.3 NC_003521.1 + 137624 0.66 0.915972
Target:  5'- -gACGCCuACCGCuCGCGCaucgCGGucGAGu -3'
miRNA:   3'- aaUGUGG-UGGCG-GUGCGa---GCCuuCUU- -5'
14105 5' -56.3 NC_003521.1 + 163117 0.66 0.915972
Target:  5'- -cACgACCACCGCCGCcucCUCGGGc--- -3'
miRNA:   3'- aaUG-UGGUGGCGGUGc--GAGCCUucuu -5'
14105 5' -56.3 NC_003521.1 + 11849 0.67 0.910134
Target:  5'- cUGCGCCGcCCGCgCACcucCUCGGAcgAGGAg -3'
miRNA:   3'- aAUGUGGU-GGCG-GUGc--GAGCCU--UCUU- -5'
14105 5' -56.3 NC_003521.1 + 151806 0.67 0.910134
Target:  5'- --uCACCGCCGUgGCGC-CGGuGGGg -3'
miRNA:   3'- aauGUGGUGGCGgUGCGaGCCuUCUu -5'
14105 5' -56.3 NC_003521.1 + 85217 0.67 0.910134
Target:  5'- -cAC-CCGgCGCCGCGC-CGGAcAGAGa -3'
miRNA:   3'- aaUGuGGUgGCGGUGCGaGCCU-UCUU- -5'
14105 5' -56.3 NC_003521.1 + 235016 0.67 0.904065
Target:  5'- -gGCACCACCcCUAgGuCUCGGAGGc- -3'
miRNA:   3'- aaUGUGGUGGcGGUgC-GAGCCUUCuu -5'
14105 5' -56.3 NC_003521.1 + 165995 0.67 0.904065
Target:  5'- -gGCGCgggaCGCCGUCGCGCUCGGc---- -3'
miRNA:   3'- aaUGUG----GUGGCGGUGCGAGCCuucuu -5'
14105 5' -56.3 NC_003521.1 + 148813 0.67 0.904065
Target:  5'- --cCGCCGCCGCCGCGcCUCGc----- -3'
miRNA:   3'- aauGUGGUGGCGGUGC-GAGCcuucuu -5'
14105 5' -56.3 NC_003521.1 + 155719 0.67 0.904065
Target:  5'- --cCGCCGCUGCCGcCGCcgaUGGggGAGu -3'
miRNA:   3'- aauGUGGUGGCGGU-GCGa--GCCuuCUU- -5'
14105 5' -56.3 NC_003521.1 + 24105 0.67 0.903445
Target:  5'- --cCGCCaauccggGCCGCCagagACGUUCGGAGGGc -3'
miRNA:   3'- aauGUGG-------UGGCGG----UGCGAGCCUUCUu -5'
14105 5' -56.3 NC_003521.1 + 111872 0.67 0.897768
Target:  5'- -cACGCCGCCaGCCccuCGUUCGGAc--- -3'
miRNA:   3'- aaUGUGGUGG-CGGu--GCGAGCCUucuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.