Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1411 | 5' | -49.7 | NC_001335.1 | + | 253 | 0.66 | 0.936196 |
Target: 5'- -cCCGUCAggaGUGGCGuaGAUCACUGu-- -3' miRNA: 3'- aaGGCAGUa--CACUGC--UUAGUGGCuuc -5' |
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1411 | 5' | -49.7 | NC_001335.1 | + | 26099 | 0.67 | 0.904907 |
Target: 5'- -aCCGUgAUGcUGGCGAAgcagCACuCGGAGc -3' miRNA: 3'- aaGGCAgUAC-ACUGCUUa---GUG-GCUUC- -5' |
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1411 | 5' | -49.7 | NC_001335.1 | + | 23213 | 0.69 | 0.848859 |
Target: 5'- cUCgGUCAcccgaGUGACGA-UCACCGAc- -3' miRNA: 3'- aAGgCAGUa----CACUGCUuAGUGGCUuc -5' |
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1411 | 5' | -49.7 | NC_001335.1 | + | 2244 | 0.69 | 0.848859 |
Target: 5'- -aCCGUCGagGUcuccGACGAGaagcUCGCCGAAGc -3' miRNA: 3'- aaGGCAGUa-CA----CUGCUU----AGUGGCUUC- -5' |
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1411 | 5' | -49.7 | NC_001335.1 | + | 46122 | 1.08 | 0.004189 |
Target: 5'- cUUCCGUCAUGUGACGAAUCACCGAAGg -3' miRNA: 3'- -AAGGCAGUACACUGCUUAGUGGCUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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