miRNA display CGI


Results 21 - 40 of 543 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14111 5' -58.5 NC_003521.1 + 78370 0.66 0.93325
Target:  5'- aGCCGGagGAGGAacacCGcCGAGGCGGacuGGa -3'
miRNA:   3'- cCGGCUg-CUCCU----GCuGCUUCGCCg--CC- -5'
14111 5' -58.5 NC_003521.1 + 98646 0.66 0.93325
Target:  5'- cGGUagCGGCGucGACGACGGcgAGCuugcGCGGa -3'
miRNA:   3'- -CCG--GCUGCucCUGCUGCU--UCGc---CGCC- -5'
14111 5' -58.5 NC_003521.1 + 118671 0.66 0.93325
Target:  5'- gGGUCGGCuucGGGaGGCGGCGGuaccGCuGGUGGa -3'
miRNA:   3'- -CCGGCUG---CUC-CUGCUGCUu---CG-CCGCC- -5'
14111 5' -58.5 NC_003521.1 + 116680 0.66 0.93325
Target:  5'- cGGCagCGGCGGcGGAgGcaGCGgcGCGGgCGGg -3'
miRNA:   3'- -CCG--GCUGCU-CCUgC--UGCuuCGCC-GCC- -5'
14111 5' -58.5 NC_003521.1 + 80453 0.66 0.93325
Target:  5'- nGCCGAaGGGGuucuUGAgGAAgGCGGCGa -3'
miRNA:   3'- cCGGCUgCUCCu---GCUgCUU-CGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 157031 0.66 0.93325
Target:  5'- aGGUUu-CGGGGGCGcgguCGGAggagcGCGGCGGg -3'
miRNA:   3'- -CCGGcuGCUCCUGCu---GCUU-----CGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 238098 0.66 0.93325
Target:  5'- aGCCaGCGAGGcggugACGGCGcucccgcacGAGUGGCGu -3'
miRNA:   3'- cCGGcUGCUCC-----UGCUGC---------UUCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 52759 0.66 0.93325
Target:  5'- aGGCCGcacucguuaACcAGGAUGGaGAuguccaGGCGGCGGu -3'
miRNA:   3'- -CCGGC---------UGcUCCUGCUgCU------UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 18236 0.66 0.93325
Target:  5'- cGCCGAgGAgaucuccucgGGACGA-GcGGUGGUGGg -3'
miRNA:   3'- cCGGCUgCU----------CCUGCUgCuUCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 95148 0.66 0.93325
Target:  5'- cGGCCG-CGccGACGGCaaGGAGuCGGcCGGc -3'
miRNA:   3'- -CCGGCuGCucCUGCUG--CUUC-GCC-GCC- -5'
14111 5' -58.5 NC_003521.1 + 117055 0.66 0.93325
Target:  5'- cGCC--CGAGG-CGgccGCGGAGCcGGCGGu -3'
miRNA:   3'- cCGGcuGCUCCuGC---UGCUUCG-CCGCC- -5'
14111 5' -58.5 NC_003521.1 + 85458 0.66 0.93325
Target:  5'- cGCCGGCGAgaaaGGugGuCGucGUGGUGc -3'
miRNA:   3'- cCGGCUGCU----CCugCuGCuuCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 134680 0.66 0.93325
Target:  5'- aGGCCGua---GAUGAUGAacuGGUGGCGGu -3'
miRNA:   3'- -CCGGCugcucCUGCUGCU---UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 78116 0.66 0.93325
Target:  5'- aGCCcgaGAUGuacaccuuGGugGGCGcguuAGCGGCGGn -3'
miRNA:   3'- cCGG---CUGCu-------CCugCUGCu---UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 43097 0.66 0.93325
Target:  5'- aGCUaGCGGGGAuguUGugGuGGUGGUGGg -3'
miRNA:   3'- cCGGcUGCUCCU---GCugCuUCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 157951 0.66 0.93325
Target:  5'- uGGCCuGAgGcuGGGCGACGA--CGGCGc -3'
miRNA:   3'- -CCGG-CUgCu-CCUGCUGCUucGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 32118 0.66 0.932781
Target:  5'- cGGCUGAucuCGGgcagguagcGGGCG-CGGugcaccaAGCGGCGGa -3'
miRNA:   3'- -CCGGCU---GCU---------CCUGCuGCU-------UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 79766 0.66 0.931836
Target:  5'- gGGCCGGUGAGGAcCGGCGuucaaguaagGAuugaaaaacaugccGCGGCGa -3'
miRNA:   3'- -CCGGCUGCUCCU-GCUGC----------UU--------------CGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 84232 0.66 0.931361
Target:  5'- aGGCCGcgcugcaccaccuCGGGGugGAUGcgauGGCGGUcgcuGGg -3'
miRNA:   3'- -CCGGCu------------GCUCCugCUGCu---UCGCCG----CC- -5'
14111 5' -58.5 NC_003521.1 + 191953 0.66 0.928465
Target:  5'- cGUCGACGAacaaGACGACGAGGacaacgaGGCu- -3'
miRNA:   3'- cCGGCUGCUc---CUGCUGCUUCg------CCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.