miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14113 3' -52.1 NC_003521.1 + 192586 0.66 0.997837
Target:  5'- -cGCGGAACGCaGGCUgcucGGCGUcgACGa -3'
miRNA:   3'- ccCGCUUUGUGaCCGGaa--CUGCA--UGC- -5'
14113 3' -52.1 NC_003521.1 + 8410 0.66 0.997837
Target:  5'- -cGC-AGGCGCUGGCgUUGcCGUGCc -3'
miRNA:   3'- ccCGcUUUGUGACCGgAACuGCAUGc -5'
14113 3' -52.1 NC_003521.1 + 162226 0.66 0.997837
Target:  5'- gGGGUGGuagcgccgacGGCGCUGGCggggugGGCGUcaACGg -3'
miRNA:   3'- -CCCGCU----------UUGUGACCGgaa---CUGCA--UGC- -5'
14113 3' -52.1 NC_003521.1 + 92137 0.66 0.997837
Target:  5'- aGGUGGca-GCUGGCCccGACGaGCGu -3'
miRNA:   3'- cCCGCUuugUGACCGGaaCUGCaUGC- -5'
14113 3' -52.1 NC_003521.1 + 212293 0.66 0.997837
Target:  5'- aGGGCGAAggccggcauggGCACgcaGGCgUUGAuacucgccaCGUGCu -3'
miRNA:   3'- -CCCGCUU-----------UGUGa--CCGgAACU---------GCAUGc -5'
14113 3' -52.1 NC_003521.1 + 131225 0.66 0.997837
Target:  5'- cGGGCcugugcuCGCUGGCCgagcUGGCGcACu -3'
miRNA:   3'- -CCCGcuuu---GUGACCGGa---ACUGCaUGc -5'
14113 3' -52.1 NC_003521.1 + 131046 0.66 0.997837
Target:  5'- uGGGCGGcGGCgGCgGGCCUcugGACGcggugGCGg -3'
miRNA:   3'- -CCCGCU-UUG-UGaCCGGAa--CUGCa----UGC- -5'
14113 3' -52.1 NC_003521.1 + 218478 0.66 0.997837
Target:  5'- uGGGC---GCAgUGGCCccgGACGU-CGg -3'
miRNA:   3'- -CCCGcuuUGUgACCGGaa-CUGCAuGC- -5'
14113 3' -52.1 NC_003521.1 + 153652 0.66 0.997837
Target:  5'- cGGUGGAGCGCUgcacGGCCgc-GCGcACGa -3'
miRNA:   3'- cCCGCUUUGUGA----CCGGaacUGCaUGC- -5'
14113 3' -52.1 NC_003521.1 + 61702 0.66 0.997837
Target:  5'- gGGGUu-GACGCUGuGCC-UGACGgaagccGCGg -3'
miRNA:   3'- -CCCGcuUUGUGAC-CGGaACUGCa-----UGC- -5'
14113 3' -52.1 NC_003521.1 + 223390 0.66 0.997446
Target:  5'- cGGCGccccGACGCgGGCCgugUGGCGccccgGCGc -3'
miRNA:   3'- cCCGCu---UUGUGaCCGGa--ACUGCa----UGC- -5'
14113 3' -52.1 NC_003521.1 + 150627 0.66 0.997446
Target:  5'- cGGCGGcugcuGCGCaGGCgggGGCGUGCGc -3'
miRNA:   3'- cCCGCUu----UGUGaCCGgaaCUGCAUGC- -5'
14113 3' -52.1 NC_003521.1 + 168549 0.66 0.997446
Target:  5'- cGGCGGcGGCGCUGGCg--GGC-UGCGg -3'
miRNA:   3'- cCCGCU-UUGUGACCGgaaCUGcAUGC- -5'
14113 3' -52.1 NC_003521.1 + 77866 0.66 0.996997
Target:  5'- cGGGCGAuGGCGCcGGCCUcguaguggaaguUGAUGg--- -3'
miRNA:   3'- -CCCGCU-UUGUGaCCGGA------------ACUGCaugc -5'
14113 3' -52.1 NC_003521.1 + 140600 0.66 0.996997
Target:  5'- cGGCGAGACGCUccgcuucgaggaGGCCguaaauaUGGCGcucguggccUGCGa -3'
miRNA:   3'- cCCGCUUUGUGA------------CCGGa------ACUGC---------AUGC- -5'
14113 3' -52.1 NC_003521.1 + 217906 0.66 0.996997
Target:  5'- aGGUGAuuuGGCcguGgUGGuCCUUGGCGUACu -3'
miRNA:   3'- cCCGCU---UUG---UgACC-GGAACUGCAUGc -5'
14113 3' -52.1 NC_003521.1 + 157962 0.66 0.996997
Target:  5'- uGGGCGAcgacGGCGCUGGUagcGACGccGCc -3'
miRNA:   3'- -CCCGCU----UUGUGACCGgaaCUGCa-UGc -5'
14113 3' -52.1 NC_003521.1 + 28356 0.66 0.996997
Target:  5'- uGGGCcacGGGC-CUGGCCUgguugaUGGCGUggcACGu -3'
miRNA:   3'- -CCCGc--UUUGuGACCGGA------ACUGCA---UGC- -5'
14113 3' -52.1 NC_003521.1 + 217737 0.66 0.996997
Target:  5'- uGGUGAGAUuCaGGCCUccuaUGGCaGUGCGa -3'
miRNA:   3'- cCCGCUUUGuGaCCGGA----ACUG-CAUGC- -5'
14113 3' -52.1 NC_003521.1 + 84538 0.66 0.996485
Target:  5'- -aGCGAGACGCUGGggggCUUGGaGUACu -3'
miRNA:   3'- ccCGCUUUGUGACCg---GAACUgCAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.