miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14113 5' -57 NC_003521.1 + 123821 1.1 0.003019
Target:  5'- cUCCGUCACGCCGACCAGCUGCUUGUCg -3'
miRNA:   3'- -AGGCAGUGCGGCUGGUCGACGAACAG- -5'
14113 5' -57 NC_003521.1 + 30408 0.77 0.396205
Target:  5'- gCCGccCACGCCGACCAcGCUGCg-GUCc -3'
miRNA:   3'- aGGCa-GUGCGGCUGGU-CGACGaaCAG- -5'
14113 5' -57 NC_003521.1 + 15691 0.77 0.404463
Target:  5'- gUCCGcaacCACGUCGACCAGgUGCU-GUCg -3'
miRNA:   3'- -AGGCa---GUGCGGCUGGUCgACGAaCAG- -5'
14113 5' -57 NC_003521.1 + 166599 0.76 0.456209
Target:  5'- aCCGUCacgGCGCCGacgGCCuGCUGCUgcUGUCc -3'
miRNA:   3'- aGGCAG---UGCGGC---UGGuCGACGA--ACAG- -5'
14113 5' -57 NC_003521.1 + 127042 0.74 0.537003
Target:  5'- cCCGUCGCGCUGGCCGucgccgucgucgacGCgGCcUGUCg -3'
miRNA:   3'- aGGCAGUGCGGCUGGU--------------CGaCGaACAG- -5'
14113 5' -57 NC_003521.1 + 167638 0.74 0.559234
Target:  5'- gUCaCGUCgAUGCCGGCCAGCUccGCgccagGUCg -3'
miRNA:   3'- -AG-GCAG-UGCGGCUGGUCGA--CGaa---CAG- -5'
14113 5' -57 NC_003521.1 + 183543 0.74 0.568981
Target:  5'- gCCG-CGCaCCGACCuGCUGCUggGUCg -3'
miRNA:   3'- aGGCaGUGcGGCUGGuCGACGAa-CAG- -5'
14113 5' -57 NC_003521.1 + 48231 0.72 0.628127
Target:  5'- uUCCGUCgACGCCGAgCAGcCUGCg---- -3'
miRNA:   3'- -AGGCAG-UGCGGCUgGUC-GACGaacag -5'
14113 5' -57 NC_003521.1 + 98799 0.72 0.632091
Target:  5'- gUCCG-CGCGCCGuCCacgucgaggcguugcAGCUGCUUGg- -3'
miRNA:   3'- -AGGCaGUGCGGCuGG---------------UCGACGAACag -5'
14113 5' -57 NC_003521.1 + 109508 0.72 0.638035
Target:  5'- gUgGUCGCGCCGGCC-GCUGCUcGa- -3'
miRNA:   3'- aGgCAGUGCGGCUGGuCGACGAaCag -5'
14113 5' -57 NC_003521.1 + 72293 0.72 0.677546
Target:  5'- gCCGcCGCGCUGgccGCCAGCcUGCUggcGUCg -3'
miRNA:   3'- aGGCaGUGCGGC---UGGUCG-ACGAa--CAG- -5'
14113 5' -57 NC_003521.1 + 208403 0.71 0.706839
Target:  5'- aCCGUCaggaggccguGCGCC-ACgGGCUGCUgUGUCg -3'
miRNA:   3'- aGGCAG----------UGCGGcUGgUCGACGA-ACAG- -5'
14113 5' -57 NC_003521.1 + 211102 0.71 0.726085
Target:  5'- gUCCGUCGCGCCGAggcUCAGCaGCc---- -3'
miRNA:   3'- -AGGCAGUGCGGCU---GGUCGaCGaacag -5'
14113 5' -57 NC_003521.1 + 2730 0.71 0.726085
Target:  5'- gCCGUCAccgccuCGCUGGCUGGCUGCUg--- -3'
miRNA:   3'- aGGCAGU------GCGGCUGGUCGACGAacag -5'
14113 5' -57 NC_003521.1 + 179716 0.71 0.735598
Target:  5'- aCCGUCuCGCCGcUCAGCUGCg---- -3'
miRNA:   3'- aGGCAGuGCGGCuGGUCGACGaacag -5'
14113 5' -57 NC_003521.1 + 87720 0.7 0.754364
Target:  5'- gCCGUCGCGCgCGcCCGGCgGCgugGUg -3'
miRNA:   3'- aGGCAGUGCG-GCuGGUCGaCGaa-CAg -5'
14113 5' -57 NC_003521.1 + 126975 0.7 0.754364
Target:  5'- gCCGUCGuCGCCGGCCGccccGCUGCc---- -3'
miRNA:   3'- aGGCAGU-GCGGCUGGU----CGACGaacag -5'
14113 5' -57 NC_003521.1 + 128495 0.7 0.754364
Target:  5'- gCUGUgCGCGCCGGCCuGCgacaGCgaGUCg -3'
miRNA:   3'- aGGCA-GUGCGGCUGGuCGa---CGaaCAG- -5'
14113 5' -57 NC_003521.1 + 176067 0.7 0.7636
Target:  5'- cCCGgugcCGCGCCGGCCGGC-GuCUUGg- -3'
miRNA:   3'- aGGCa---GUGCGGCUGGUCGaC-GAACag -5'
14113 5' -57 NC_003521.1 + 168727 0.7 0.7636
Target:  5'- -gCGUCggguaaauaaaACGCCGACgCGGUUGCggGUCg -3'
miRNA:   3'- agGCAG-----------UGCGGCUG-GUCGACGaaCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.