miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14118 3' -51.1 NC_003521.1 + 31043 0.66 0.998649
Target:  5'- uGGGGGGUGg----GAGGA-CCACGc -3'
miRNA:   3'- gCCCCCCACagauaUUUUUcGGUGCa -5'
14118 3' -51.1 NC_003521.1 + 211269 0.66 0.998379
Target:  5'- cCGGGGuGUGUCgGUGGGuGGGUCGCGc -3'
miRNA:   3'- -GCCCCcCACAGaUAUUU-UUCGGUGCa -5'
14118 3' -51.1 NC_003521.1 + 153393 0.66 0.997702
Target:  5'- uGGGGGGcUGgauggGAAAGGCgACGa -3'
miRNA:   3'- gCCCCCC-ACagauaUUUUUCGgUGCa -5'
14118 3' -51.1 NC_003521.1 + 123496 0.66 0.997702
Target:  5'- cCGGcGGGGUGUCguc--GucGCCGCu- -3'
miRNA:   3'- -GCC-CCCCACAGauauuUuuCGGUGca -5'
14118 3' -51.1 NC_003521.1 + 67430 0.66 0.997702
Target:  5'- aCGGGuGGUGUUUGc--GGAGCCGCu- -3'
miRNA:   3'- -GCCCcCCACAGAUauuUUUCGGUGca -5'
14118 3' -51.1 NC_003521.1 + 13823 0.66 0.997282
Target:  5'- uCGGGGuuugguguccGGUGUCUGUAuuuGGCUcggcGCGg -3'
miRNA:   3'- -GCCCC----------CCACAGAUAUuuuUCGG----UGCa -5'
14118 3' -51.1 NC_003521.1 + 13412 0.66 0.997282
Target:  5'- uGuGGGGGUGUCagAUGGGAacGGUCGCc- -3'
miRNA:   3'- gC-CCCCCACAGa-UAUUUU--UCGGUGca -5'
14118 3' -51.1 NC_003521.1 + 34 0.67 0.996253
Target:  5'- gGGGGGGUGUUUuuggcGGGGGGgCACu- -3'
miRNA:   3'- gCCCCCCACAGAua---UUUUUCgGUGca -5'
14118 3' -51.1 NC_003521.1 + 240583 0.67 0.996253
Target:  5'- gGGGGGGUGUUUuuggcGGGGGGgCACu- -3'
miRNA:   3'- gCCCCCCACAGAua---UUUUUCgGUGca -5'
14118 3' -51.1 NC_003521.1 + 40356 0.67 0.996253
Target:  5'- gGGGGGGUGUUUuuggcGGGGGGgCACu- -3'
miRNA:   3'- gCCCCCCACAGAua---UUUUUCgGUGca -5'
14118 3' -51.1 NC_003521.1 + 109932 0.67 0.994922
Target:  5'- aCGGGGGGUcGaUCUGUcgccgcAGGCaCACGg -3'
miRNA:   3'- -GCCCCCCA-C-AGAUAuuu---UUCG-GUGCa -5'
14118 3' -51.1 NC_003521.1 + 13897 0.69 0.98536
Target:  5'- cCGGGGGGcccggCgcggAGGGGGCCGCGg -3'
miRNA:   3'- -GCCCCCCaca--Gaua-UUUUUCGGUGCa -5'
14118 3' -51.1 NC_003521.1 + 205653 0.7 0.97711
Target:  5'- aGGGGGGUaaaacccaUAUAAAAGGCCcgggcGCGUg -3'
miRNA:   3'- gCCCCCCAcag-----AUAUUUUUCGG-----UGCA- -5'
14118 3' -51.1 NC_003521.1 + 216310 0.7 0.974598
Target:  5'- gCGGGGGuGaUGUCgggaAAGAGGCCGCu- -3'
miRNA:   3'- -GCCCCC-C-ACAGaua-UUUUUCGGUGca -5'
14118 3' -51.1 NC_003521.1 + 197402 0.71 0.958981
Target:  5'- cCGGGacuGGGUGUCU------GGCCACGa -3'
miRNA:   3'- -GCCC---CCCACAGAuauuuuUCGGUGCa -5'
14118 3' -51.1 NC_003521.1 + 105897 0.72 0.942489
Target:  5'- cCGGGGGcGUGUacgu---AGGCCGCGUc -3'
miRNA:   3'- -GCCCCC-CACAgauauuuUUCGGUGCA- -5'
14118 3' -51.1 NC_003521.1 + 86976 0.73 0.891439
Target:  5'- aGGGGGuUGUCUacgauGUAGGAGGCgGCGg -3'
miRNA:   3'- gCCCCCcACAGA-----UAUUUUUCGgUGCa -5'
14118 3' -51.1 NC_003521.1 + 121115 0.75 0.838902
Target:  5'- aGGuGGGGUGUucgCUGUAcuGGGGGCCGCGc -3'
miRNA:   3'- gCC-CCCCACA---GAUAU--UUUUCGGUGCa -5'
14118 3' -51.1 NC_003521.1 + 171450 0.76 0.795572
Target:  5'- aGGGGGGUGaCUAgGGAAA-CCACGUg -3'
miRNA:   3'- gCCCCCCACaGAUaUUUUUcGGUGCA- -5'
14118 3' -51.1 NC_003521.1 + 120306 1.07 0.016977
Target:  5'- uCGGGGGGUGUCUAUAAAAAGCCACGUc -3'
miRNA:   3'- -GCCCCCCACAGAUAUUUUUCGGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.