miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14118 5' -60.4 NC_003521.1 + 105868 0.66 0.823151
Target:  5'- gGCGCGUGCCcacgaUCagGGCGcAGAUGCCg -3'
miRNA:   3'- -UGUGCGCGG-----AGagCCGCcUCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 53350 0.66 0.823151
Target:  5'- cACGCcgGCGCgg--CGGCGGAGGgGCCg -3'
miRNA:   3'- -UGUG--CGCGgagaGCCGCCUCUgUGGa -5'
14118 5' -60.4 NC_003521.1 + 75124 0.66 0.823151
Target:  5'- cGCACGguggaCGgCUUUCGGCGGccgaccuggGGAUGCCUg -3'
miRNA:   3'- -UGUGC-----GCgGAGAGCCGCC---------UCUGUGGA- -5'
14118 5' -60.4 NC_003521.1 + 118688 0.66 0.823151
Target:  5'- gGCACGUGCUgaaagccguguUCagccgCGGC-GAGACGCCg -3'
miRNA:   3'- -UGUGCGCGG-----------AGa----GCCGcCUCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 167585 0.66 0.823151
Target:  5'- aGCGCGUGUCgauggagagCGGCGcgcaGAGGCGCCg -3'
miRNA:   3'- -UGUGCGCGGaga------GCCGC----CUCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 37626 0.66 0.823151
Target:  5'- cCugGUgGCCUC-CGGCGGuGaACAUCUg -3'
miRNA:   3'- uGugCG-CGGAGaGCCGCCuC-UGUGGA- -5'
14118 5' -60.4 NC_003521.1 + 155331 0.66 0.81504
Target:  5'- cCGCGgGUC-C-CGGCGGGGGCGCg- -3'
miRNA:   3'- uGUGCgCGGaGaGCCGCCUCUGUGga -5'
14118 5' -60.4 NC_003521.1 + 238453 0.66 0.81504
Target:  5'- gGCGCaggGCgGCCUCggcgggcggGGCGGAGACGCg- -3'
miRNA:   3'- -UGUG---CG-CGGAGag-------CCGCCUCUGUGga -5'
14118 5' -60.4 NC_003521.1 + 196557 0.66 0.81504
Target:  5'- uGCACGCugaucuCCUC-CGGCGu-GACGCCg -3'
miRNA:   3'- -UGUGCGc-----GGAGaGCCGCcuCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 154650 0.66 0.81504
Target:  5'- aGCACGUGCCgCUggccgaggcCGGCaGcGAGACGCUg -3'
miRNA:   3'- -UGUGCGCGGaGA---------GCCG-C-CUCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 38225 0.66 0.81504
Target:  5'- gGCGCaggGCgGCCUCggcgggcggGGCGGAGACGCg- -3'
miRNA:   3'- -UGUG---CG-CGGAGag-------CCGCCUCUGUGga -5'
14118 5' -60.4 NC_003521.1 + 166231 0.66 0.806781
Target:  5'- -gGCGCGCCgg-CcGCGG-GACGCCg -3'
miRNA:   3'- ugUGCGCGGagaGcCGCCuCUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 104109 0.66 0.806781
Target:  5'- gGCGCGCuGCCagucCUCGGCGGcguccugcucGGGC-CCg -3'
miRNA:   3'- -UGUGCG-CGGa---GAGCCGCC----------UCUGuGGa -5'
14118 5' -60.4 NC_003521.1 + 100611 0.66 0.806781
Target:  5'- gGCgaaGCGUCUCUUGGCcGGGGgACCUc -3'
miRNA:   3'- -UGug-CGCGGAGAGCCGcCUCUgUGGA- -5'
14118 5' -60.4 NC_003521.1 + 75548 0.66 0.80678
Target:  5'- aGCG-GCGCCgg-CGGCGGcuACGCCa -3'
miRNA:   3'- -UGUgCGCGGagaGCCGCCucUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 100616 0.66 0.80678
Target:  5'- ---aGCGUCUCUUGGCcGGGGgACCUc -3'
miRNA:   3'- ugugCGCGGAGAGCCGcCUCUgUGGA- -5'
14118 5' -60.4 NC_003521.1 + 36403 0.66 0.80678
Target:  5'- uACAacaGCGCCUCgagCGuGaCGGAGAagGCCUc -3'
miRNA:   3'- -UGUg--CGCGGAGa--GC-C-GCCUCUg-UGGA- -5'
14118 5' -60.4 NC_003521.1 + 169030 0.67 0.798381
Target:  5'- uGCGCGCGCCggucaagcuggUCUCGGC----GCGCCa -3'
miRNA:   3'- -UGUGCGCGG-----------AGAGCCGccucUGUGGa -5'
14118 5' -60.4 NC_003521.1 + 36584 0.67 0.798381
Target:  5'- uGCGCGaacugGCCUggCGGCGG-GugGCCg -3'
miRNA:   3'- -UGUGCg----CGGAgaGCCGCCuCugUGGa -5'
14118 5' -60.4 NC_003521.1 + 181250 0.67 0.798381
Target:  5'- -gGCGCGCUUCUCGGaCGaaacccccGcGGCGCCg -3'
miRNA:   3'- ugUGCGCGGAGAGCC-GC--------CuCUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.