miRNA display CGI


Results 1 - 20 of 412 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14119 3' -53.6 NC_003521.1 + 220166 0.66 0.992252
Target:  5'- gCGCcacgGUCAucACGUAGGCGCccACCa -3'
miRNA:   3'- gGCGa---CGGUuuUGCGUCUGCGa-UGGc -5'
14119 3' -53.6 NC_003521.1 + 180812 0.66 0.992252
Target:  5'- gCCGgUGCUGucGCGCugcuGcAgGCUGCCGg -3'
miRNA:   3'- -GGCgACGGUuuUGCGu---C-UgCGAUGGC- -5'
14119 3' -53.6 NC_003521.1 + 235295 0.66 0.992252
Target:  5'- gCGCcGCCAAcuggcGACGaCAGAUGCgacgGCUa -3'
miRNA:   3'- gGCGaCGGUU-----UUGC-GUCUGCGa---UGGc -5'
14119 3' -53.6 NC_003521.1 + 76912 0.66 0.992252
Target:  5'- gCCGCUGCCGc--CGCAcccgaguaACGC-ACCGu -3'
miRNA:   3'- -GGCGACGGUuuuGCGUc-------UGCGaUGGC- -5'
14119 3' -53.6 NC_003521.1 + 60731 0.66 0.992252
Target:  5'- gCCGCUGCCcucccuGGACggGguGACGCgcaaCGa -3'
miRNA:   3'- -GGCGACGGu-----UUUG--CguCUGCGaug-GC- -5'
14119 3' -53.6 NC_003521.1 + 212024 0.66 0.992252
Target:  5'- gCCGUgUGCCAAGugGCaugagaGGGCGCgggGCg- -3'
miRNA:   3'- -GGCG-ACGGUUUugCG------UCUGCGa--UGgc -5'
14119 3' -53.6 NC_003521.1 + 24547 0.66 0.992252
Target:  5'- uCCGCU-CCAcga-GCuGGCGCUACUa -3'
miRNA:   3'- -GGCGAcGGUuuugCGuCUGCGAUGGc -5'
14119 3' -53.6 NC_003521.1 + 107432 0.66 0.992252
Target:  5'- gCCGaC-GCgAAAGCGCGGaccgccGCGCUguGCCGg -3'
miRNA:   3'- -GGC-GaCGgUUUUGCGUC------UGCGA--UGGC- -5'
14119 3' -53.6 NC_003521.1 + 164527 0.66 0.992252
Target:  5'- uCCGCUGCCGGAcccggacucgcagcaGCGgCAGcgacucuuccucuCGCcACCGg -3'
miRNA:   3'- -GGCGACGGUUU---------------UGC-GUCu------------GCGaUGGC- -5'
14119 3' -53.6 NC_003521.1 + 183769 0.66 0.992252
Target:  5'- gCCGCUGCUAcuGCuGC-GACGgUcCCGa -3'
miRNA:   3'- -GGCGACGGUuuUG-CGuCUGCgAuGGC- -5'
14119 3' -53.6 NC_003521.1 + 108130 0.66 0.992252
Target:  5'- gCCGCgucccGCCA--GC-CGGGCGCgaGCCGa -3'
miRNA:   3'- -GGCGa----CGGUuuUGcGUCUGCGa-UGGC- -5'
14119 3' -53.6 NC_003521.1 + 112876 0.66 0.992252
Target:  5'- cCCGCggcugGCCGAcGACGuCAGcCGCgagaucGCCGc -3'
miRNA:   3'- -GGCGa----CGGUU-UUGC-GUCuGCGa-----UGGC- -5'
14119 3' -53.6 NC_003521.1 + 206300 0.66 0.992252
Target:  5'- gCCGCUcGCgCGucucggccCGCGGcCGCUACCu -3'
miRNA:   3'- -GGCGA-CG-GUuuu-----GCGUCuGCGAUGGc -5'
14119 3' -53.6 NC_003521.1 + 106099 0.66 0.992252
Target:  5'- aCCGCaagGCCucGGGCaCGGGCGUggcgGCCGu -3'
miRNA:   3'- -GGCGa--CGGu-UUUGcGUCUGCGa---UGGC- -5'
14119 3' -53.6 NC_003521.1 + 142439 0.66 0.992252
Target:  5'- gCGCcGCCGAAGCcuCGGGCGCcACUu -3'
miRNA:   3'- gGCGaCGGUUUUGc-GUCUGCGaUGGc -5'
14119 3' -53.6 NC_003521.1 + 111859 0.66 0.992252
Target:  5'- gCGCcGCCGuacuucguGGUGCAGACGCUGgUGg -3'
miRNA:   3'- gGCGaCGGUu-------UUGCGUCUGCGAUgGC- -5'
14119 3' -53.6 NC_003521.1 + 240449 0.66 0.992252
Target:  5'- cCCGCgugagGCgGGcagcgguCGCAGGCGCcGCCu -3'
miRNA:   3'- -GGCGa----CGgUUuu-----GCGUCUGCGaUGGc -5'
14119 3' -53.6 NC_003521.1 + 143571 0.66 0.992252
Target:  5'- aUCGCUGgC-GGGCaCGGGCGuCUACCGc -3'
miRNA:   3'- -GGCGACgGuUUUGcGUCUGC-GAUGGC- -5'
14119 3' -53.6 NC_003521.1 + 114933 0.66 0.992252
Target:  5'- gCgGCUGCUGGAgagcugcucGCGCAGcgGCGgCUGCUGc -3'
miRNA:   3'- -GgCGACGGUUU---------UGCGUC--UGC-GAUGGC- -5'
14119 3' -53.6 NC_003521.1 + 40221 0.66 0.992252
Target:  5'- cCCGCgugagGCgGGcagcgguCGCAGGCGCcGCCu -3'
miRNA:   3'- -GGCGa----CGgUUuu-----GCGUCUGCGaUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.