miRNA display CGI


Results 1 - 20 of 412 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14119 3' -53.6 NC_003521.1 + 173738 0.72 0.837831
Target:  5'- gCGCuUGCCAGAG-GCAGGCuGCUGCUc -3'
miRNA:   3'- gGCG-ACGGUUUUgCGUCUG-CGAUGGc -5'
14119 3' -53.6 NC_003521.1 + 223822 0.74 0.768281
Target:  5'- gCCGCcGCCAc--CGCGGGCGcCUGCUGu -3'
miRNA:   3'- -GGCGaCGGUuuuGCGUCUGC-GAUGGC- -5'
14119 3' -53.6 NC_003521.1 + 76966 0.74 0.777471
Target:  5'- gUCGCgGCCGAuGCGCGuGAUGCUGgCGg -3'
miRNA:   3'- -GGCGaCGGUUuUGCGU-CUGCGAUgGC- -5'
14119 3' -53.6 NC_003521.1 + 190333 0.74 0.777471
Target:  5'- aCCGCcGCCGAcACGCuGugGCacgcGCCGg -3'
miRNA:   3'- -GGCGaCGGUUuUGCGuCugCGa---UGGC- -5'
14119 3' -53.6 NC_003521.1 + 42945 0.73 0.784733
Target:  5'- uCCGCUGCCGccugcagcccagcGAGCGCGacccgccGGCGCccACCGa -3'
miRNA:   3'- -GGCGACGGU-------------UUUGCGU-------CUGCGa-UGGC- -5'
14119 3' -53.6 NC_003521.1 + 225876 0.73 0.812893
Target:  5'- gCCGgUGCUccauGCGCGucuGGCGCUGCCGc -3'
miRNA:   3'- -GGCgACGGuuu-UGCGU---CUGCGAUGGC- -5'
14119 3' -53.6 NC_003521.1 + 214342 0.73 0.821374
Target:  5'- aUCGC-GCCAGAgagcGCGCAGGCGgUGCUc -3'
miRNA:   3'- -GGCGaCGGUUU----UGCGUCUGCgAUGGc -5'
14119 3' -53.6 NC_003521.1 + 198032 0.72 0.829689
Target:  5'- gCCGCUGCC-GAGCGUgAGuACGagaUACCGa -3'
miRNA:   3'- -GGCGACGGuUUUGCG-UC-UGCg--AUGGC- -5'
14119 3' -53.6 NC_003521.1 + 68102 0.72 0.829689
Target:  5'- cCCGCUGgucuCCAAGACGUGGACGgagacGCCGu -3'
miRNA:   3'- -GGCGAC----GGUUUUGCGUCUGCga---UGGC- -5'
14119 3' -53.6 NC_003521.1 + 164473 0.74 0.740046
Target:  5'- gCCGCUGCCGccgcCGCAGcCGUcACCGu -3'
miRNA:   3'- -GGCGACGGUuuu-GCGUCuGCGaUGGC- -5'
14119 3' -53.6 NC_003521.1 + 101516 0.75 0.730442
Target:  5'- aCGCgGCCGAccaGCAGGCGCUGCa- -3'
miRNA:   3'- gGCGaCGGUUuugCGUCUGCGAUGgc -5'
14119 3' -53.6 NC_003521.1 + 112202 0.75 0.681365
Target:  5'- gCGCgUGuCCGAAGCGgAGGCGCUGCUc -3'
miRNA:   3'- gGCG-AC-GGUUUUGCgUCUGCGAUGGc -5'
14119 3' -53.6 NC_003521.1 + 86676 0.79 0.484452
Target:  5'- aUCGC-GCCGAaagaaGACGCuGGCGCUGCCGc -3'
miRNA:   3'- -GGCGaCGGUU-----UUGCGuCUGCGAUGGC- -5'
14119 3' -53.6 NC_003521.1 + 154657 0.77 0.601213
Target:  5'- gCCGCUgGCCGAggccggcagcgaGACGCuGGAgGCUACCGc -3'
miRNA:   3'- -GGCGA-CGGUU------------UUGCG-UCUgCGAUGGC- -5'
14119 3' -53.6 NC_003521.1 + 165781 0.77 0.611231
Target:  5'- gCCGaagGCCAGccCGCuGGCGCUGCCGu -3'
miRNA:   3'- -GGCga-CGGUUuuGCGuCUGCGAUGGC- -5'
14119 3' -53.6 NC_003521.1 + 124144 0.77 0.621264
Target:  5'- gCCGCUGCCuc--CGCcGcCGCUGCCGu -3'
miRNA:   3'- -GGCGACGGuuuuGCGuCuGCGAUGGC- -5'
14119 3' -53.6 NC_003521.1 + 224244 0.77 0.621264
Target:  5'- aCCGCUGUCGAacauggugaAAUGCAGGCGCgcGCCc -3'
miRNA:   3'- -GGCGACGGUU---------UUGCGUCUGCGa-UGGc -5'
14119 3' -53.6 NC_003521.1 + 26175 0.76 0.631305
Target:  5'- aUGCUGCCAacgAAGCGCAGcCGCUcGCUGc -3'
miRNA:   3'- gGCGACGGU---UUUGCGUCuGCGA-UGGC- -5'
14119 3' -53.6 NC_003521.1 + 67582 0.76 0.631305
Target:  5'- cCCGCggGCCAGAgucgccaacACGCGGGCaaGCUACUGa -3'
miRNA:   3'- -GGCGa-CGGUUU---------UGCGUCUG--CGAUGGC- -5'
14119 3' -53.6 NC_003521.1 + 64747 0.76 0.671398
Target:  5'- gCCGUgGCCAAGACGCcggccGGCGCggcACCGg -3'
miRNA:   3'- -GGCGaCGGUUUUGCGu----CUGCGa--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.