miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14119 5' -62.5 NC_003521.1 + 198811 0.66 0.776713
Target:  5'- cGGCGGCgucuguCGUGCCGccGUGUUGCUgcugCGAc -3'
miRNA:   3'- -CCGCCG------GCGCGGCa-CGUAGCGGa---GCU- -5'
14119 5' -62.5 NC_003521.1 + 131478 0.66 0.776713
Target:  5'- cGuCGGCCuccuGCGCCGgcUGCugcCGCCUCa- -3'
miRNA:   3'- cC-GCCGG----CGCGGC--ACGua-GCGGAGcu -5'
14119 5' -62.5 NC_003521.1 + 136180 0.66 0.776713
Target:  5'- aGGCGGCgGCGUCGaGCAUgaaggCGCucuuCUCGc -3'
miRNA:   3'- -CCGCCGgCGCGGCaCGUA-----GCG----GAGCu -5'
14119 5' -62.5 NC_003521.1 + 100437 0.66 0.776713
Target:  5'- aGCGGCgGCGCuCGggaGCAggGCCgcCGAa -3'
miRNA:   3'- cCGCCGgCGCG-GCa--CGUagCGGa-GCU- -5'
14119 5' -62.5 NC_003521.1 + 138435 0.66 0.776713
Target:  5'- aGgGGCacuacucgucccCGCG-CGUGCAUCGCCggCGGc -3'
miRNA:   3'- cCgCCG------------GCGCgGCACGUAGCGGa-GCU- -5'
14119 5' -62.5 NC_003521.1 + 126080 0.66 0.776713
Target:  5'- uGUGGCCGCGCCacccccacggcGUGCcggauccagcgGUCGaUCUCGu -3'
miRNA:   3'- cCGCCGGCGCGG-----------CACG-----------UAGC-GGAGCu -5'
14119 5' -62.5 NC_003521.1 + 36081 0.66 0.776713
Target:  5'- cGGCGGCgGCGCCuc-CAUCaccacCCUCGc -3'
miRNA:   3'- -CCGCCGgCGCGGcacGUAGc----GGAGCu -5'
14119 5' -62.5 NC_003521.1 + 17016 0.66 0.776713
Target:  5'- uGGCGGCgGCGCag-GCccGUCGUCUggCGGc -3'
miRNA:   3'- -CCGCCGgCGCGgcaCG--UAGCGGA--GCU- -5'
14119 5' -62.5 NC_003521.1 + 20383 0.66 0.776713
Target:  5'- uGUGGCUGCggguguacGCCGUGC-UCGUCUUu- -3'
miRNA:   3'- cCGCCGGCG--------CGGCACGuAGCGGAGcu -5'
14119 5' -62.5 NC_003521.1 + 140564 0.66 0.776713
Target:  5'- cGGCGGCgGCGgCGacaGC-UCGUCgUCGGg -3'
miRNA:   3'- -CCGCCGgCGCgGCa--CGuAGCGG-AGCU- -5'
14119 5' -62.5 NC_003521.1 + 106849 0.66 0.776713
Target:  5'- cGCGGCCaGCGuCCGcGCAUggaCGCC-CGu -3'
miRNA:   3'- cCGCCGG-CGC-GGCaCGUA---GCGGaGCu -5'
14119 5' -62.5 NC_003521.1 + 110690 0.66 0.776713
Target:  5'- uGGCGGCaGCGgCG-GCGcCGCCgaCGAc -3'
miRNA:   3'- -CCGCCGgCGCgGCaCGUaGCGGa-GCU- -5'
14119 5' -62.5 NC_003521.1 + 157290 0.66 0.775853
Target:  5'- cGGCGGCCGCGUaCGgggggagGCGggauuggaCGCCgcuccguUCGAu -3'
miRNA:   3'- -CCGCCGGCGCG-GCa------CGUa-------GCGG-------AGCU- -5'
14119 5' -62.5 NC_003521.1 + 116367 0.66 0.775852
Target:  5'- cGGCGGCgaacgCGUGCCGccGCGgcccaaccacgucUCGCCggaCGAg -3'
miRNA:   3'- -CCGCCG-----GCGCGGCa-CGU-------------AGCGGa--GCU- -5'
14119 5' -62.5 NC_003521.1 + 156056 0.66 0.768057
Target:  5'- cGGCGGUgccaacaaCGuCGCCGccGCcgCGCC-CGAg -3'
miRNA:   3'- -CCGCCG--------GC-GCGGCa-CGuaGCGGaGCU- -5'
14119 5' -62.5 NC_003521.1 + 16860 0.66 0.768057
Target:  5'- aGGCGGaCGUcuacgaCGUGCGUuccccgcggcCGCCUCGAc -3'
miRNA:   3'- -CCGCCgGCGcg----GCACGUA----------GCGGAGCU- -5'
14119 5' -62.5 NC_003521.1 + 110672 0.66 0.768057
Target:  5'- cGGuCGGCCaGCG-CGUcgGUgGCCUCGAg -3'
miRNA:   3'- -CC-GCCGG-CGCgGCAcgUAgCGGAGCU- -5'
14119 5' -62.5 NC_003521.1 + 77715 0.66 0.768057
Target:  5'- aGGCGGCgGUgGUCGUgGCGcuggCGCC-CGAg -3'
miRNA:   3'- -CCGCCGgCG-CGGCA-CGUa---GCGGaGCU- -5'
14119 5' -62.5 NC_003521.1 + 118935 0.66 0.768057
Target:  5'- gGGCGGCgGCGucCCGUcaggGCcagCGCC-CGAg -3'
miRNA:   3'- -CCGCCGgCGC--GGCA----CGua-GCGGaGCU- -5'
14119 5' -62.5 NC_003521.1 + 148520 0.66 0.768057
Target:  5'- cGCGGCUGCGCCuccucCcgCGCCUucccCGAg -3'
miRNA:   3'- cCGCCGGCGCGGcac--GuaGCGGA----GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.