miRNA display CGI


Results 1 - 20 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14119 5' -62.5 NC_003521.1 + 120246 1.1 0.001246
Target:  5'- cGGCGGCCGCGCCGUGCAUCGCCUCGAc -3'
miRNA:   3'- -CCGCCGGCGCGGCACGUAGCGGAGCU- -5'
14119 5' -62.5 NC_003521.1 + 95107 0.78 0.187224
Target:  5'- aGCGGCCGCGCgCGcuugaGCGUgGCCUUGAa -3'
miRNA:   3'- cCGCCGGCGCG-GCa----CGUAgCGGAGCU- -5'
14119 5' -62.5 NC_003521.1 + 236364 0.78 0.191597
Target:  5'- cGGgGGCCGCagGCgGUGCcuucagAUCGCCUCGGg -3'
miRNA:   3'- -CCgCCGGCG--CGgCACG------UAGCGGAGCU- -5'
14119 5' -62.5 NC_003521.1 + 98475 0.77 0.21483
Target:  5'- cGGCGGCCGCggcgGCCGUgGCGgcgGCCUCGc -3'
miRNA:   3'- -CCGCCGGCG----CGGCA-CGUag-CGGAGCu -5'
14119 5' -62.5 NC_003521.1 + 95145 0.76 0.229902
Target:  5'- aGGCGGCCGCGCCGacgGCAagGagUCGGc -3'
miRNA:   3'- -CCGCCGGCGCGGCa--CGUagCggAGCU- -5'
14119 5' -62.5 NC_003521.1 + 135928 0.76 0.245856
Target:  5'- cGGCcacGGCCGCGggaUGUGCGaCGCCUCGGg -3'
miRNA:   3'- -CCG---CCGGCGCg--GCACGUaGCGGAGCU- -5'
14119 5' -62.5 NC_003521.1 + 96655 0.76 0.250818
Target:  5'- cGGCaGGCgGCGCCG-GCGUgcuugaagagcaaCGCCUCGGa -3'
miRNA:   3'- -CCG-CCGgCGCGGCaCGUA-------------GCGGAGCU- -5'
14119 5' -62.5 NC_003521.1 + 72541 0.76 0.251375
Target:  5'- aGGCGGCgGCGaCgGUGuCGUCGUCUCGc -3'
miRNA:   3'- -CCGCCGgCGC-GgCAC-GUAGCGGAGCu -5'
14119 5' -62.5 NC_003521.1 + 235288 0.76 0.256995
Target:  5'- cGGCGGCCGCGCCG-GC--UGCCgUCa- -3'
miRNA:   3'- -CCGCCGGCGCGGCaCGuaGCGG-AGcu -5'
14119 5' -62.5 NC_003521.1 + 117061 0.75 0.268544
Target:  5'- aGGCGGCCGCggaGCCG-GCGgucaCGCCgugCGAu -3'
miRNA:   3'- -CCGCCGGCG---CGGCaCGUa---GCGGa--GCU- -5'
14119 5' -62.5 NC_003521.1 + 106312 0.75 0.280507
Target:  5'- cGGCGGCCGUGC---GCAUCGCCUg-- -3'
miRNA:   3'- -CCGCCGGCGCGgcaCGUAGCGGAgcu -5'
14119 5' -62.5 NC_003521.1 + 58782 0.75 0.286646
Target:  5'- gGGCGGCgCGCGCCGgcgacgacGCAUagacgGUCUCGAg -3'
miRNA:   3'- -CCGCCG-GCGCGGCa-------CGUAg----CGGAGCU- -5'
14119 5' -62.5 NC_003521.1 + 91765 0.75 0.29038
Target:  5'- cGCGGCCGCGUCGaagcccagcgcggGCAcgGCCUCGAg -3'
miRNA:   3'- cCGCCGGCGCGGCa------------CGUagCGGAGCU- -5'
14119 5' -62.5 NC_003521.1 + 149766 0.75 0.29289
Target:  5'- gGGCGGCCGCGCg--GUA-CGCCUCa- -3'
miRNA:   3'- -CCGCCGGCGCGgcaCGUaGCGGAGcu -5'
14119 5' -62.5 NC_003521.1 + 148429 0.74 0.305046
Target:  5'- gGGCGGCCGCGCCGgcgGCuccagggGUgGCCggugCGu -3'
miRNA:   3'- -CCGCCGGCGCGGCa--CG-------UAgCGGa---GCu -5'
14119 5' -62.5 NC_003521.1 + 205351 0.74 0.325702
Target:  5'- cGGCGGCagcuGCGCCGUGCA-CGaCCUgCGc -3'
miRNA:   3'- -CCGCCGg---CGCGGCACGUaGC-GGA-GCu -5'
14119 5' -62.5 NC_003521.1 + 105572 0.73 0.346665
Target:  5'- cGGCGuCCGcCGCCGUGuCGUCGCCgccgcCGGc -3'
miRNA:   3'- -CCGCcGGC-GCGGCAC-GUAGCGGa----GCU- -5'
14119 5' -62.5 NC_003521.1 + 223467 0.73 0.361167
Target:  5'- gGGCcGCCGCGCCG-GCGUCacgGCC-CGGg -3'
miRNA:   3'- -CCGcCGGCGCGGCaCGUAG---CGGaGCU- -5'
14119 5' -62.5 NC_003521.1 + 221709 0.73 0.361167
Target:  5'- cGGCGGCC-CGCCacccGCGUCGUCUCc- -3'
miRNA:   3'- -CCGCCGGcGCGGca--CGUAGCGGAGcu -5'
14119 5' -62.5 NC_003521.1 + 140212 0.73 0.368575
Target:  5'- uGGCGGCCGaguCGCCGUGCAgcaugauggCGgCUCc- -3'
miRNA:   3'- -CCGCCGGC---GCGGCACGUa--------GCgGAGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.