miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1412 3' -57.1 NC_001335.1 + 36818 0.66 0.639013
Target:  5'- uGCGcCAGGUCUaCGacGGCCCGGUugGu- -3'
miRNA:   3'- -UGCaGUUCGGA-GC--CUGGGCCAugCug -5'
1412 3' -57.1 NC_001335.1 + 10373 0.66 0.628149
Target:  5'- gGCG-CAuGUUUCGcGCCCGGUgGCGACc -3'
miRNA:   3'- -UGCaGUuCGGAGCcUGGGCCA-UGCUG- -5'
1412 3' -57.1 NC_001335.1 + 15621 0.66 0.628149
Target:  5'- cGCGUagcGGuCCUCGGuccagcCCCGGUACuGCu -3'
miRNA:   3'- -UGCAgu-UC-GGAGCCu-----GGGCCAUGcUG- -5'
1412 3' -57.1 NC_001335.1 + 16432 0.66 0.624891
Target:  5'- aACGU--GGCCUCGGGCCUcgugaacauggccgGGU-CGAUc -3'
miRNA:   3'- -UGCAguUCGGAGCCUGGG--------------CCAuGCUG- -5'
1412 3' -57.1 NC_001335.1 + 9016 0.67 0.574061
Target:  5'- gGCGUCGuucccguuguGCCgcuuccgaacCGGACCCGGcucucggaccugUACGGCa -3'
miRNA:   3'- -UGCAGUu---------CGGa---------GCCUGGGCC------------AUGCUG- -5'
1412 3' -57.1 NC_001335.1 + 46630 0.67 0.552692
Target:  5'- --uUCGAGCCUCGGuACaa-GUACGACu -3'
miRNA:   3'- ugcAGUUCGGAGCC-UGggcCAUGCUG- -5'
1412 3' -57.1 NC_001335.1 + 5594 0.67 0.53893
Target:  5'- aGCGUCGAGCCcgccccagaUCaGGACgaugcccagcagugCCGGgGCGGCg -3'
miRNA:   3'- -UGCAGUUCGG---------AG-CCUG--------------GGCCaUGCUG- -5'
1412 3' -57.1 NC_001335.1 + 50726 0.69 0.450521
Target:  5'- cUGUCAAGUCUCaGGCCCa--GCGACg -3'
miRNA:   3'- uGCAGUUCGGAGcCUGGGccaUGCUG- -5'
1412 3' -57.1 NC_001335.1 + 12308 0.69 0.421904
Target:  5'- gGCGUacucGGCCUC-GACUCGGacUGCGACg -3'
miRNA:   3'- -UGCAgu--UCGGAGcCUGGGCC--AUGCUG- -5'
1412 3' -57.1 NC_001335.1 + 27411 0.7 0.394409
Target:  5'- gGCGUCu-GCCUCGGAga-GGUGgGACg -3'
miRNA:   3'- -UGCAGuuCGGAGCCUgggCCAUgCUG- -5'
1412 3' -57.1 NC_001335.1 + 11807 0.7 0.376735
Target:  5'- -gGUCucGCUggUGGACCCGG-ACGGCa -3'
miRNA:   3'- ugCAGuuCGGa-GCCUGGGCCaUGCUG- -5'
1412 3' -57.1 NC_001335.1 + 12068 0.7 0.368101
Target:  5'- cACGUC--GCCUCGGGCaCGGUcguCGGCu -3'
miRNA:   3'- -UGCAGuuCGGAGCCUGgGCCAu--GCUG- -5'
1412 3' -57.1 NC_001335.1 + 18563 0.73 0.255279
Target:  5'- gAUGUCucGCUUCaGGGCUCGGUGgGACa -3'
miRNA:   3'- -UGCAGuuCGGAG-CCUGGGCCAUgCUG- -5'
1412 3' -57.1 NC_001335.1 + 1438 0.73 0.248864
Target:  5'- cUGgCAGGCUUUGGACCCGGaucaccACGACg -3'
miRNA:   3'- uGCaGUUCGGAGCCUGGGCCa-----UGCUG- -5'
1412 3' -57.1 NC_001335.1 + 20912 0.73 0.242582
Target:  5'- cACGUCGGuCCUCGGcuACCCGGU-CGAg -3'
miRNA:   3'- -UGCAGUUcGGAGCC--UGGGCCAuGCUg -5'
1412 3' -57.1 NC_001335.1 + 46390 1.08 0.000802
Target:  5'- aACGUCAAGCCUCGGACCCGGUACGACc -3'
miRNA:   3'- -UGCAGUUCGGAGCCUGGGCCAUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.