Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1412 | 5' | -58.7 | NC_001335.1 | + | 17595 | 0.68 | 0.420369 |
Target: 5'- aUcgGCgggAUGGUCAGCGCaGCGGUCa -3' miRNA: 3'- gAuaCGgg-UGCCAGUCGCGcUGCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 30300 | 0.68 | 0.420369 |
Target: 5'- -gAUGUCCAgccCGGuggucUCAGUGuCGACGGCg -3' miRNA: 3'- gaUACGGGU---GCC-----AGUCGC-GCUGCCGg -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 15144 | 0.68 | 0.411192 |
Target: 5'- ---gGCCCagcuucagcaGCGGcuUCAGCuCGACGGUCa -3' miRNA: 3'- gauaCGGG----------UGCC--AGUCGcGCUGCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 46759 | 0.68 | 0.411192 |
Target: 5'- ---aGCCUcacggGCGGUCAGCGgaucuacgucuaCGGCGuGCCc -3' miRNA: 3'- gauaCGGG-----UGCCAGUCGC------------GCUGC-CGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 22968 | 0.68 | 0.40214 |
Target: 5'- -gAUGCCgACGGUCGGaGCGuugucguugacGCGGaCCc -3' miRNA: 3'- gaUACGGgUGCCAGUCgCGC-----------UGCC-GG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 45534 | 0.68 | 0.393216 |
Target: 5'- ---cGUCCucguacucgACGGUCAGCGaccaGACGGUg -3' miRNA: 3'- gauaCGGG---------UGCCAGUCGCg---CUGCCGg -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 36454 | 0.68 | 0.390564 |
Target: 5'- -gAUGCCCugGCGGUgGGUGUguccgaugaucaccGACGuGCCg -3' miRNA: 3'- gaUACGGG--UGCCAgUCGCG--------------CUGC-CGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 9040 | 0.69 | 0.375759 |
Target: 5'- ---aGCCCACucaccGUCAGCGCGGaaccaGCCg -3' miRNA: 3'- gauaCGGGUGc----CAGUCGCGCUgc---CGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 32927 | 0.69 | 0.358832 |
Target: 5'- ---cGCCguCGGcgaCGGUGaCGACGGCCu -3' miRNA: 3'- gauaCGGguGCCa--GUCGC-GCUGCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 34854 | 0.69 | 0.350571 |
Target: 5'- --cUGCCgGCaGGUCGGCaucUGugGGCCu -3' miRNA: 3'- gauACGGgUG-CCAGUCGc--GCugCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 49000 | 0.69 | 0.342447 |
Target: 5'- --uUGCCguCGGcCAGCGUuguGACGaGCCg -3' miRNA: 3'- gauACGGguGCCaGUCGCG---CUGC-CGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 32583 | 0.7 | 0.334458 |
Target: 5'- --cUGCCUGCGG--GGCGCGAgacugcugcUGGCCa -3' miRNA: 3'- gauACGGGUGCCagUCGCGCU---------GCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 46433 | 0.7 | 0.326607 |
Target: 5'- ---gGCCUuguucuccucgGCGGUCAgGCGUuccuuGACGGCCu -3' miRNA: 3'- gauaCGGG-----------UGCCAGU-CGCG-----CUGCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 25892 | 0.7 | 0.326607 |
Target: 5'- -gGUGCCCuuGGU-GGU-CGACGGCCu -3' miRNA: 3'- gaUACGGGugCCAgUCGcGCUGCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 23105 | 0.7 | 0.311318 |
Target: 5'- ---gGCCaCAUGGUCGGa-CGACGGCg -3' miRNA: 3'- gauaCGG-GUGCCAGUCgcGCUGCCGg -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 21986 | 0.71 | 0.285182 |
Target: 5'- ---cGCCCccaccgaucucgaauGCGccGUCAGCGcCGAUGGCCu -3' miRNA: 3'- gauaCGGG---------------UGC--CAGUCGC-GCUGCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 39804 | 0.71 | 0.275496 |
Target: 5'- ---cGUCCACGG-CGGCGCucGCGGCg -3' miRNA: 3'- gauaCGGGUGCCaGUCGCGc-UGCCGg -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 50285 | 0.73 | 0.199878 |
Target: 5'- --cUGCCCucCGGUCaaGGCuucuccugcccggacGCGACGGCCu -3' miRNA: 3'- gauACGGGu-GCCAG--UCG---------------CGCUGCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 34269 | 0.73 | 0.197802 |
Target: 5'- gUGUGCgC-CGGUCGGCGCGGauGUCg -3' miRNA: 3'- gAUACGgGuGCCAGUCGCGCUgcCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 47371 | 0.75 | 0.15585 |
Target: 5'- ---cGCUacaGCGGUCGGaGCGAUGGCCu -3' miRNA: 3'- gauaCGGg--UGCCAGUCgCGCUGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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