miRNA display CGI


Results 21 - 40 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14120 3' -55.8 NC_003521.1 + 182980 0.66 0.961926
Target:  5'- aGCAGCGAcgGCGuuCgGCg-UCACCGGCc -3'
miRNA:   3'- -UGUCGCU--UGUggGgUGgaAGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 135824 0.66 0.961926
Target:  5'- cGCGGCGAcgaACGCUCCcguGCCcaugagCACCGGg -3'
miRNA:   3'- -UGUCGCU---UGUGGGG---UGGaa----GUGGCUg -5'
14120 3' -55.8 NC_003521.1 + 1464 0.66 0.961926
Target:  5'- gGCAGCacacGGGCAUCCCGCUgcagaCGCCcgGACg -3'
miRNA:   3'- -UGUCG----CUUGUGGGGUGGaa---GUGG--CUG- -5'
14120 3' -55.8 NC_003521.1 + 59927 0.66 0.961926
Target:  5'- -aGGUGGGC-UCCCACCUcUCGCUGGa -3'
miRNA:   3'- ugUCGCUUGuGGGGUGGA-AGUGGCUg -5'
14120 3' -55.8 NC_003521.1 + 223377 0.66 0.961246
Target:  5'- aGCAGCGAcaucgcgGCGCCCCgacgcggGCCguguggcgCcCCGGCg -3'
miRNA:   3'- -UGUCGCU-------UGUGGGG-------UGGaa------GuGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 105792 0.66 0.958446
Target:  5'- --uGCGAggaGCACCUgcaCAgCUUCACCGAg -3'
miRNA:   3'- uguCGCU---UGUGGG---GUgGAAGUGGCUg -5'
14120 3' -55.8 NC_003521.1 + 143549 0.66 0.958446
Target:  5'- cCGGCGAcgaGCAgCagCCGCCaUCGCUGGCg -3'
miRNA:   3'- uGUCGCU---UGUgG--GGUGGaAGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 141373 0.66 0.958446
Target:  5'- cCAGCGcugucuGGCGCCCUACCgcuUCauGCUGGCc -3'
miRNA:   3'- uGUCGC------UUGUGGGGUGGa--AG--UGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 196368 0.66 0.958446
Target:  5'- uCGGCGAACACUuccaCCGCCUcCugCGu- -3'
miRNA:   3'- uGUCGCUUGUGG----GGUGGAaGugGCug -5'
14120 3' -55.8 NC_003521.1 + 117239 0.66 0.958446
Target:  5'- cGCGGCGGcucccgGCGCCgCCGCCaUC-CCGcCa -3'
miRNA:   3'- -UGUCGCU------UGUGG-GGUGGaAGuGGCuG- -5'
14120 3' -55.8 NC_003521.1 + 167047 0.66 0.958446
Target:  5'- gGCAGCGGcgugGCGCUCaugaCGCCggUGCCGGCc -3'
miRNA:   3'- -UGUCGCU----UGUGGG----GUGGaaGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 168608 0.66 0.958446
Target:  5'- cACGGCGAguGCGCCUCguGCagUCACgGGCa -3'
miRNA:   3'- -UGUCGCU--UGUGGGG--UGgaAGUGgCUG- -5'
14120 3' -55.8 NC_003521.1 + 90319 0.66 0.958446
Target:  5'- cUAGC-AGgGCCCCGCCggCGCCGu- -3'
miRNA:   3'- uGUCGcUUgUGGGGUGGaaGUGGCug -5'
14120 3' -55.8 NC_003521.1 + 3848 0.66 0.958446
Target:  5'- aGCucuGCcGACGCCgUACCUgUUGCCGACg -3'
miRNA:   3'- -UGu--CGcUUGUGGgGUGGA-AGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 214641 0.66 0.958446
Target:  5'- uGCAGCGAGCgGCUgCG-CUUCGuuGGCa -3'
miRNA:   3'- -UGUCGCUUG-UGGgGUgGAAGUggCUG- -5'
14120 3' -55.8 NC_003521.1 + 79314 0.66 0.958446
Target:  5'- -aAGCGAAUggGCCCCACC---ACgCGACc -3'
miRNA:   3'- ugUCGCUUG--UGGGGUGGaagUG-GCUG- -5'
14120 3' -55.8 NC_003521.1 + 190017 0.66 0.958446
Target:  5'- cACcGgGGACACCgCUGCCaUCACCGuCg -3'
miRNA:   3'- -UGuCgCUUGUGG-GGUGGaAGUGGCuG- -5'
14120 3' -55.8 NC_003521.1 + 55954 0.66 0.958446
Target:  5'- aGCAccGUGuGCAgCCCCACCa-CGCCGAUg -3'
miRNA:   3'- -UGU--CGCuUGU-GGGGUGGaaGUGGCUG- -5'
14120 3' -55.8 NC_003521.1 + 130137 0.66 0.958446
Target:  5'- gGCGGCGc-CGCCgCUGCCgcCACCGAg -3'
miRNA:   3'- -UGUCGCuuGUGG-GGUGGaaGUGGCUg -5'
14120 3' -55.8 NC_003521.1 + 137173 0.66 0.958086
Target:  5'- cGCAGCGGccgccgccgagcuGC-CCCCGCUggagUCGgCGGCc -3'
miRNA:   3'- -UGUCGCU-------------UGuGGGGUGGa---AGUgGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.