miRNA display CGI


Results 21 - 40 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14120 5' -54.3 NC_003521.1 + 96653 0.66 0.965244
Target:  5'- ---cGCGGCAGGC-GGc--GCCGGCGu -3'
miRNA:   3'- cauaCGCCGUUCGaCCucaUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 128917 0.66 0.965244
Target:  5'- -gAUGCGGUugaGGGcCUGGcGcGCCAGCGu -3'
miRNA:   3'- caUACGCCG---UUC-GACCuCaUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 117390 0.67 0.961883
Target:  5'- -gGUGCGGCAcGCgcu-GUGCUGGCAc -3'
miRNA:   3'- caUACGCCGUuCGaccuCAUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 119338 0.67 0.961883
Target:  5'- ---cGCGGuCGGGCaGGGGU-CCGGCc -3'
miRNA:   3'- cauaCGCC-GUUCGaCCUCAuGGUCGu -5'
14120 5' -54.3 NC_003521.1 + 102359 0.67 0.959762
Target:  5'- ---gGCGGCAGgcGCUcuugaagaaguacacGGGGUGCCGGUc -3'
miRNA:   3'- cauaCGCCGUU--CGA---------------CCUCAUGGUCGu -5'
14120 5' -54.3 NC_003521.1 + 19563 0.67 0.958304
Target:  5'- cGUGUGCGGCuucugcuGGCUGGuGUuCCcucacaAGCu -3'
miRNA:   3'- -CAUACGCCGu------UCGACCuCAuGG------UCGu -5'
14120 5' -54.3 NC_003521.1 + 44354 0.67 0.958304
Target:  5'- ---gGCGGaaCGGGCc-GAGUGCCAGCGg -3'
miRNA:   3'- cauaCGCC--GUUCGacCUCAUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 110351 0.67 0.954501
Target:  5'- ---cGCGGUGuAGCUGG---GCCAGCAc -3'
miRNA:   3'- cauaCGCCGU-UCGACCucaUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 123530 0.67 0.954501
Target:  5'- -cGUGgGGC-AGCgugaGGGGaGCCGGCAc -3'
miRNA:   3'- caUACgCCGuUCGa---CCUCaUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 21938 0.67 0.954501
Target:  5'- ---gGCGGCcucGGGCUGGAGcaguggGCgAGCGc -3'
miRNA:   3'- cauaCGCCG---UUCGACCUCa-----UGgUCGU- -5'
14120 5' -54.3 NC_003521.1 + 144107 0.67 0.954501
Target:  5'- -cAUGCGGCu-GCUGGAccGCC-GCGg -3'
miRNA:   3'- caUACGCCGuuCGACCUcaUGGuCGU- -5'
14120 5' -54.3 NC_003521.1 + 129182 0.67 0.950469
Target:  5'- -cGUGCGGCGGuuUGG-GUuucGCCGGCGg -3'
miRNA:   3'- caUACGCCGUUcgACCuCA---UGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 168558 0.67 0.949215
Target:  5'- ---cGCuGGCGGGCUGcGGGUAagguggcggcugacCCAGCGg -3'
miRNA:   3'- cauaCG-CCGUUCGAC-CUCAU--------------GGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 214981 0.67 0.946206
Target:  5'- ---gGCGGC-GGCcaggGGGGUgcgaGCCAGCGg -3'
miRNA:   3'- cauaCGCCGuUCGa---CCUCA----UGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 18856 0.67 0.941709
Target:  5'- -aGUGCGGCGuggAGCUGucGUGUCAGCu -3'
miRNA:   3'- caUACGCCGU---UCGACcuCAUGGUCGu -5'
14120 5' -54.3 NC_003521.1 + 112722 0.67 0.941709
Target:  5'- -gAUGCaGCGccuGCUGGAGUcgcgcuuCCAGCGc -3'
miRNA:   3'- caUACGcCGUu--CGACCUCAu------GGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 198779 0.67 0.941246
Target:  5'- -cGUG-GGCGAGgUGGguagcagcugcguGGUGCCGGCGg -3'
miRNA:   3'- caUACgCCGUUCgACC-------------UCAUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 197318 0.68 0.936975
Target:  5'- ---gGCGGCAGGCgcugacGGAuGUuggccgccgcgGCCAGCAc -3'
miRNA:   3'- cauaCGCCGUUCGa-----CCU-CA-----------UGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 19124 0.68 0.936975
Target:  5'- ---gGUGGCGGGCcgccGGuGUACCAGUc -3'
miRNA:   3'- cauaCGCCGUUCGa---CCuCAUGGUCGu -5'
14120 5' -54.3 NC_003521.1 + 184166 0.68 0.936975
Target:  5'- -gGUGC-GCGAGCgGGAGgugcACCGGCc -3'
miRNA:   3'- caUACGcCGUUCGaCCUCa---UGGUCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.