miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1413 5' -52.7 NC_001335.1 + 16246 0.66 0.86198
Target:  5'- uCUGCGUUcggaGCCGGCGcugGCGUaGUCGc -3'
miRNA:   3'- -GAUGCAG----UGGCCGUucaUGCAaCGGC- -5'
1413 5' -52.7 NC_001335.1 + 568 0.66 0.86198
Target:  5'- -cGCGUCACC-GCGAuUACGccGCCa -3'
miRNA:   3'- gaUGCAGUGGcCGUUcAUGCaaCGGc -5'
1413 5' -52.7 NC_001335.1 + 11918 0.66 0.853547
Target:  5'- -cGCGUCGuagaCGGUGAGgucgGCGUUggaGCCGg -3'
miRNA:   3'- gaUGCAGUg---GCCGUUCa---UGCAA---CGGC- -5'
1413 5' -52.7 NC_001335.1 + 23314 0.66 0.853547
Target:  5'- -cGCcugCGCCGGUAGGauCGUUGUCGg -3'
miRNA:   3'- gaUGca-GUGGCCGUUCauGCAACGGC- -5'
1413 5' -52.7 NC_001335.1 + 17212 0.66 0.853547
Target:  5'- --cCGUCGCCaGCGccgggauGUGCGggGCCa -3'
miRNA:   3'- gauGCAGUGGcCGUu------CAUGCaaCGGc -5'
1413 5' -52.7 NC_001335.1 + 32340 0.66 0.835971
Target:  5'- -cGCGcCACCGagaucgaucCGGGUGCGUUGCgGg -3'
miRNA:   3'- gaUGCaGUGGCc--------GUUCAUGCAACGgC- -5'
1413 5' -52.7 NC_001335.1 + 34856 0.66 0.81751
Target:  5'- aUAUGUCGCCGGUcgacAAGaGCaagaUUGCCGu -3'
miRNA:   3'- gAUGCAGUGGCCG----UUCaUGc---AACGGC- -5'
1413 5' -52.7 NC_001335.1 + 24436 0.67 0.798245
Target:  5'- gCUACGuUCGCCgcucaGGCAGGUGCGacGaCCa -3'
miRNA:   3'- -GAUGC-AGUGG-----CCGUUCAUGCaaC-GGc -5'
1413 5' -52.7 NC_001335.1 + 46608 0.69 0.704028
Target:  5'- aCUACaaCACCGGgGAGUACaa-GCCGa -3'
miRNA:   3'- -GAUGcaGUGGCCgUUCAUGcaaCGGC- -5'
1413 5' -52.7 NC_001335.1 + 43195 0.69 0.693038
Target:  5'- --uCGUCAcCCGGCGAGU----UGCCGg -3'
miRNA:   3'- gauGCAGU-GGCCGUUCAugcaACGGC- -5'
1413 5' -52.7 NC_001335.1 + 1244 0.69 0.670886
Target:  5'- -gGCGUCACCGGUGGcgGCGgaaguggaGCCGg -3'
miRNA:   3'- gaUGCAGUGGCCGUUcaUGCaa------CGGC- -5'
1413 5' -52.7 NC_001335.1 + 51788 0.69 0.659748
Target:  5'- aCUACGUgC-CCGGUAucgGCGUUGUCGu -3'
miRNA:   3'- -GAUGCA-GuGGCCGUucaUGCAACGGC- -5'
1413 5' -52.7 NC_001335.1 + 50719 0.7 0.637404
Target:  5'- uCUACGUCGCUcgaGGCAacgGGUACGU--CCGu -3'
miRNA:   3'- -GAUGCAGUGG---CCGU---UCAUGCAacGGC- -5'
1413 5' -52.7 NC_001335.1 + 26602 0.7 0.626219
Target:  5'- aUGCGaccCAUCGGCAAGUAgGcUGUCGg -3'
miRNA:   3'- gAUGCa--GUGGCCGUUCAUgCaACGGC- -5'
1413 5' -52.7 NC_001335.1 + 47969 0.71 0.54861
Target:  5'- -gGCGUgACCGGCAAGUucuggGCCa -3'
miRNA:   3'- gaUGCAgUGGCCGUUCAugcaaCGGc -5'
1413 5' -52.7 NC_001335.1 + 11606 0.75 0.368819
Target:  5'- -cACGUCGCCGGUccAGUGCGggaucuucugGCCGg -3'
miRNA:   3'- gaUGCAGUGGCCGu-UCAUGCaa--------CGGC- -5'
1413 5' -52.7 NC_001335.1 + 46845 1.09 0.00199
Target:  5'- cCUACGUCACCGGCAAGUACGUUGCCGc -3'
miRNA:   3'- -GAUGCAGUGGCCGUUCAUGCAACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.