miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14130 3' -57.8 NC_003521.1 + 168994 0.66 0.909673
Target:  5'- -cGGUcgcgGGAGGCGGgCGacgGgGCCGGCa -3'
miRNA:   3'- cuCCA----UUUCCGCCgGCa--CgUGGUCGa -5'
14130 3' -57.8 NC_003521.1 + 117059 0.66 0.909673
Target:  5'- -----cGAGGCGGCCGcgGaGCCGGCg -3'
miRNA:   3'- cuccauUUCCGCCGGCa-CgUGGUCGa -5'
14130 3' -57.8 NC_003521.1 + 17751 0.66 0.909673
Target:  5'- cGAGGccGGGGaacuGGCCGUacCGCCGGCg -3'
miRNA:   3'- -CUCCauUUCCg---CCGGCAc-GUGGUCGa -5'
14130 3' -57.8 NC_003521.1 + 190535 0.66 0.909673
Target:  5'- cGAGGUGc-GGCGGCa--GCAgCGGCg -3'
miRNA:   3'- -CUCCAUuuCCGCCGgcaCGUgGUCGa -5'
14130 3' -57.8 NC_003521.1 + 126303 0.66 0.909673
Target:  5'- -uGGUGcccguGGCGGCgGUGgGCaCGGCg -3'
miRNA:   3'- cuCCAUuu---CCGCCGgCACgUG-GUCGa -5'
14130 3' -57.8 NC_003521.1 + 131209 0.66 0.909673
Target:  5'- -cGGcgAGAGG-GGCCG-GCGCCAGa- -3'
miRNA:   3'- cuCCa-UUUCCgCCGGCaCGUGGUCga -5'
14130 3' -57.8 NC_003521.1 + 172107 0.66 0.903688
Target:  5'- --cGUGcGGGCGGCCGacgGCGCCAc-- -3'
miRNA:   3'- cucCAUuUCCGCCGGCa--CGUGGUcga -5'
14130 3' -57.8 NC_003521.1 + 43633 0.66 0.903688
Target:  5'- cGAGGaGGAGGCGGCgGccGCcGCCGGa- -3'
miRNA:   3'- -CUCCaUUUCCGCCGgCa-CG-UGGUCga -5'
14130 3' -57.8 NC_003521.1 + 186774 0.66 0.903688
Target:  5'- -cGGcGGAGGCGGCgGUggugGCGgCGGCg -3'
miRNA:   3'- cuCCaUUUCCGCCGgCA----CGUgGUCGa -5'
14130 3' -57.8 NC_003521.1 + 106578 0.66 0.903077
Target:  5'- cGGGUcacccuggccGAGGGCGGCgcgggcagcuacuCGgccaagcgGCACCAGCg -3'
miRNA:   3'- cUCCA----------UUUCCGCCG-------------GCa-------CGUGGUCGa -5'
14130 3' -57.8 NC_003521.1 + 68499 0.66 0.897482
Target:  5'- ------cAGGaCGGCCGaggccUGCGCCAGCg -3'
miRNA:   3'- cuccauuUCC-GCCGGC-----ACGUGGUCGa -5'
14130 3' -57.8 NC_003521.1 + 177934 0.66 0.897482
Target:  5'- gGAGGgaUGGGGaGUGGCCGgucgGUACCGGg- -3'
miRNA:   3'- -CUCC--AUUUC-CGCCGGCa---CGUGGUCga -5'
14130 3' -57.8 NC_003521.1 + 216187 0.66 0.897482
Target:  5'- cAGGacGAAGGC-GCUGaGCACCGGCg -3'
miRNA:   3'- cUCCa-UUUCCGcCGGCaCGUGGUCGa -5'
14130 3' -57.8 NC_003521.1 + 235285 0.66 0.897482
Target:  5'- -uGGc---GGCGGCC--GCGCCGGCUg -3'
miRNA:   3'- cuCCauuuCCGCCGGcaCGUGGUCGA- -5'
14130 3' -57.8 NC_003521.1 + 18920 0.66 0.897482
Target:  5'- aAGGgu--GGC-GCCGcGCGCCGGCa -3'
miRNA:   3'- cUCCauuuCCGcCGGCaCGUGGUCGa -5'
14130 3' -57.8 NC_003521.1 + 115672 0.66 0.897482
Target:  5'- cGGGUGAagaAGGCGGCCaGgcgGaacaGCCGGUg -3'
miRNA:   3'- cUCCAUU---UCCGCCGG-Ca--Cg---UGGUCGa -5'
14130 3' -57.8 NC_003521.1 + 237176 0.66 0.897482
Target:  5'- cGAGGcAGAcggcGGCGGCCGUGgCAC--GCUa -3'
miRNA:   3'- -CUCCaUUU----CCGCCGGCAC-GUGguCGA- -5'
14130 3' -57.8 NC_003521.1 + 187661 0.66 0.895577
Target:  5'- -cGGcGAGGGCGGCCGcgUGUACUguuacgcgcccucgGGCg -3'
miRNA:   3'- cuCCaUUUCCGCCGGC--ACGUGG--------------UCGa -5'
14130 3' -57.8 NC_003521.1 + 188445 0.66 0.891057
Target:  5'- -uGGccgacacGCGGaCUGUGCACCAGCUc -3'
miRNA:   3'- cuCCauuuc--CGCC-GGCACGUGGUCGA- -5'
14130 3' -57.8 NC_003521.1 + 228979 0.66 0.891057
Target:  5'- gGAGGUGcgcGGGCGGCgcaGgACCGGCa -3'
miRNA:   3'- -CUCCAUu--UCCGCCGgcaCgUGGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.