miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14130 5' -56.1 NC_003521.1 + 97763 0.65 0.969707
Target:  5'- aUCGCC-ACCG--GCGCCACCaccaccauccaggUCGCGg -3'
miRNA:   3'- -AGUGGaUGGCgcUGCGGUGGa------------AGUGC- -5'
14130 5' -56.1 NC_003521.1 + 232388 0.66 0.967971
Target:  5'- cCACCgucUCGCGcuggcuGCGCCugCggCACGg -3'
miRNA:   3'- aGUGGau-GGCGC------UGCGGugGaaGUGC- -5'
14130 5' -56.1 NC_003521.1 + 27697 0.66 0.967971
Target:  5'- uUCGCUgcgGCCGCaccACGCCACacccagCGCGu -3'
miRNA:   3'- -AGUGGa--UGGCGc--UGCGGUGgaa---GUGC- -5'
14130 5' -56.1 NC_003521.1 + 25778 0.66 0.967971
Target:  5'- aUCGCCUGCC-UGGCccuGUcgCACUUUCACGa -3'
miRNA:   3'- -AGUGGAUGGcGCUG---CG--GUGGAAGUGC- -5'
14130 5' -56.1 NC_003521.1 + 128381 0.66 0.967971
Target:  5'- cCACCaggGCCGCcuGgGCCGCCUgaGCGg -3'
miRNA:   3'- aGUGGa--UGGCGc-UgCGGUGGAagUGC- -5'
14130 5' -56.1 NC_003521.1 + 169546 0.66 0.967971
Target:  5'- -gGCCcgUGCCGCGGCccCCGCCUcCGCc -3'
miRNA:   3'- agUGG--AUGGCGCUGc-GGUGGAaGUGc -5'
14130 5' -56.1 NC_003521.1 + 153201 0.66 0.967971
Target:  5'- -gGCCUGCgGCGGCaCCugCUgcCACa -3'
miRNA:   3'- agUGGAUGgCGCUGcGGugGAa-GUGc -5'
14130 5' -56.1 NC_003521.1 + 137157 0.66 0.967971
Target:  5'- cCGCCaugGCCGCGGCcgcagcggccGCCGCCga-GCu -3'
miRNA:   3'- aGUGGa--UGGCGCUG----------CGGUGGaagUGc -5'
14130 5' -56.1 NC_003521.1 + 85641 0.66 0.967971
Target:  5'- gCACCUcccccccggcaGCCGCGGcCGCCAgCUguUC-CGa -3'
miRNA:   3'- aGUGGA-----------UGGCGCU-GCGGUgGA--AGuGC- -5'
14130 5' -56.1 NC_003521.1 + 67407 0.66 0.967971
Target:  5'- gCACC-ACCaGCaGCGCCcCCUcCACGg -3'
miRNA:   3'- aGUGGaUGG-CGcUGCGGuGGAaGUGC- -5'
14130 5' -56.1 NC_003521.1 + 101439 0.66 0.967971
Target:  5'- -gACC-ACCGCGGgGCCAagagCACGg -3'
miRNA:   3'- agUGGaUGGCGCUgCGGUggaaGUGC- -5'
14130 5' -56.1 NC_003521.1 + 165787 0.66 0.967971
Target:  5'- -gGCCagcCCGCuGGCGCUGCCgUCGCa -3'
miRNA:   3'- agUGGau-GGCG-CUGCGGUGGaAGUGc -5'
14130 5' -56.1 NC_003521.1 + 145023 0.66 0.967971
Target:  5'- aUCGCCgacgcgcuggAUCGCGugGCCGagCggCACGa -3'
miRNA:   3'- -AGUGGa---------UGGCGCugCGGUg-GaaGUGC- -5'
14130 5' -56.1 NC_003521.1 + 72399 0.66 0.967971
Target:  5'- cCGCC-GCCGCGGCccuGCCGCC--CGCc -3'
miRNA:   3'- aGUGGaUGGCGCUG---CGGUGGaaGUGc -5'
14130 5' -56.1 NC_003521.1 + 211844 0.66 0.967971
Target:  5'- uUCGCgUACgGCaGCGaCCACgaUCGCGg -3'
miRNA:   3'- -AGUGgAUGgCGcUGC-GGUGgaAGUGC- -5'
14130 5' -56.1 NC_003521.1 + 135010 0.66 0.967674
Target:  5'- cCACCaucuggcUGCCGggcacCGugGCCugCgUCACGg -3'
miRNA:   3'- aGUGG-------AUGGC-----GCugCGGugGaAGUGC- -5'
14130 5' -56.1 NC_003521.1 + 166583 0.66 0.967674
Target:  5'- -uGCUUGuagaugcCCGUGACGCCcACCUgUCGCa -3'
miRNA:   3'- agUGGAU-------GGCGCUGCGG-UGGA-AGUGc -5'
14130 5' -56.1 NC_003521.1 + 150261 0.66 0.967674
Target:  5'- -gGCCUgcACCGCGGC-CgGCCUcucgugggugcugUCGCGg -3'
miRNA:   3'- agUGGA--UGGCGCUGcGgUGGA-------------AGUGC- -5'
14130 5' -56.1 NC_003521.1 + 40529 0.66 0.964922
Target:  5'- -gGCCcGCCGC-ACGCCGCC---GCGg -3'
miRNA:   3'- agUGGaUGGCGcUGCGGUGGaagUGC- -5'
14130 5' -56.1 NC_003521.1 + 73966 0.66 0.964922
Target:  5'- -gACCUGcgcCCGCcGCGCCACCgccUGCGu -3'
miRNA:   3'- agUGGAU---GGCGcUGCGGUGGaa-GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.