miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14132 3' -56.1 NC_003521.1 + 202529 0.66 0.957858
Target:  5'- gGCCgACGAGCUcucgcACCugcugcgCGCCGGCCUc -3'
miRNA:   3'- -UGG-UGUUCGAc----UGGua-----GCGGCUGGAc -5'
14132 3' -56.1 NC_003521.1 + 2301 0.66 0.957858
Target:  5'- gGCCgACGAGCUcucgcACCugcugcgCGCCGGCCUc -3'
miRNA:   3'- -UGG-UGUUCGAc----UGGua-----GCGGCUGGAc -5'
14132 3' -56.1 NC_003521.1 + 207551 0.66 0.957858
Target:  5'- cUCGCAGcuGCUGcACgAUcgCGCCGGCCUGc -3'
miRNA:   3'- uGGUGUU--CGAC-UGgUA--GCGGCUGGAC- -5'
14132 3' -56.1 NC_003521.1 + 57825 0.66 0.957858
Target:  5'- uGCCGCAugaAGCUcGGCCGgugaCGCCGaacGCCg- -3'
miRNA:   3'- -UGGUGU---UCGA-CUGGUa---GCGGC---UGGac -5'
14132 3' -56.1 NC_003521.1 + 192241 0.66 0.957858
Target:  5'- cGCCGCGGGagggUGGCCGUUaGCCGucACCUu -3'
miRNA:   3'- -UGGUGUUCg---ACUGGUAG-CGGC--UGGAc -5'
14132 3' -56.1 NC_003521.1 + 188655 0.66 0.957858
Target:  5'- aAUCGCGGGCgGACCcgcgguaccGUCGCUGACg-- -3'
miRNA:   3'- -UGGUGUUCGaCUGG---------UAGCGGCUGgac -5'
14132 3' -56.1 NC_003521.1 + 198621 0.66 0.957858
Target:  5'- uGCgACAGccGCUGGCCcagggaaaCGCCGugCUGu -3'
miRNA:   3'- -UGgUGUU--CGACUGGua------GCGGCugGAC- -5'
14132 3' -56.1 NC_003521.1 + 66303 0.66 0.957858
Target:  5'- gACCACuaauggaaccAGCgcGGCCAUCGCgGcCCUGc -3'
miRNA:   3'- -UGGUGu---------UCGa-CUGGUAGCGgCuGGAC- -5'
14132 3' -56.1 NC_003521.1 + 205349 0.66 0.957858
Target:  5'- gGCgGCGgcAGCUGcGCCGU-GCaCGACCUGc -3'
miRNA:   3'- -UGgUGU--UCGAC-UGGUAgCG-GCUGGAC- -5'
14132 3' -56.1 NC_003521.1 + 172779 0.66 0.954128
Target:  5'- cACCGgGGGCgccgcgGACCA-CGCCGcCCg- -3'
miRNA:   3'- -UGGUgUUCGa-----CUGGUaGCGGCuGGac -5'
14132 3' -56.1 NC_003521.1 + 156008 0.66 0.954128
Target:  5'- -gCGCGAGCUGGCCcguAUCGagcugcCCGACgUGc -3'
miRNA:   3'- ugGUGUUCGACUGG---UAGC------GGCUGgAC- -5'
14132 3' -56.1 NC_003521.1 + 155060 0.66 0.954128
Target:  5'- gGCUGCGAggcGCUGGCCAccUCGCUcauGGCCa- -3'
miRNA:   3'- -UGGUGUU---CGACUGGU--AGCGG---CUGGac -5'
14132 3' -56.1 NC_003521.1 + 37861 0.66 0.954128
Target:  5'- -aCACAGGCUGGCC--UGCgGACUg- -3'
miRNA:   3'- ugGUGUUCGACUGGuaGCGgCUGGac -5'
14132 3' -56.1 NC_003521.1 + 184975 0.66 0.954128
Target:  5'- gGCCAgCGuggacCUGugCAagGCCGGCCUGc -3'
miRNA:   3'- -UGGU-GUuc---GACugGUagCGGCUGGAC- -5'
14132 3' -56.1 NC_003521.1 + 171692 0.66 0.952967
Target:  5'- aGCaACAAGCgUGACgacaaacaacgucaCGUCGCCGGCgUGg -3'
miRNA:   3'- -UGgUGUUCG-ACUG--------------GUAGCGGCUGgAC- -5'
14132 3' -56.1 NC_003521.1 + 158093 0.66 0.952967
Target:  5'- cCCGCAAGCgGACCcgcaacgcagccucGUUGCUgGACUUGg -3'
miRNA:   3'- uGGUGUUCGaCUGG--------------UAGCGG-CUGGAC- -5'
14132 3' -56.1 NC_003521.1 + 79328 0.66 0.950182
Target:  5'- aGCaGCAAGCagcgcGACgAUCGCCGAUCa- -3'
miRNA:   3'- -UGgUGUUCGa----CUGgUAGCGGCUGGac -5'
14132 3' -56.1 NC_003521.1 + 134229 0.66 0.950182
Target:  5'- gGCCGaguAGCUG-CCcgCGCCGcCCUc -3'
miRNA:   3'- -UGGUgu-UCGACuGGuaGCGGCuGGAc -5'
14132 3' -56.1 NC_003521.1 + 209518 0.66 0.950182
Target:  5'- gUCACGG--UGACCGUCGCCGcuGCCg- -3'
miRNA:   3'- uGGUGUUcgACUGGUAGCGGC--UGGac -5'
14132 3' -56.1 NC_003521.1 + 89616 0.66 0.950182
Target:  5'- cGCCGCGgucaccguGGUggUGACCGUCG-CGGCCg- -3'
miRNA:   3'- -UGGUGU--------UCG--ACUGGUAGCgGCUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.