miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14132 5' -60 NC_003521.1 + 42560 0.66 0.869584
Target:  5'- cGCCcGGCUGGCuguccGGCGGCCGa---GUCu -3'
miRNA:   3'- -CGGuUCGACUG-----CCGCCGGCaccaCGG- -5'
14132 5' -60 NC_003521.1 + 109430 0.66 0.869584
Target:  5'- gGCCAGGauaGACaG-GGCCGUGG-GCa -3'
miRNA:   3'- -CGGUUCga-CUGcCgCCGGCACCaCGg -5'
14132 5' -60 NC_003521.1 + 184308 0.66 0.869584
Target:  5'- aGCCu-GCUGAUGaaacgcuaccGCGGCCGUca-GCCg -3'
miRNA:   3'- -CGGuuCGACUGC----------CGCCGGCAccaCGG- -5'
14132 5' -60 NC_003521.1 + 137036 0.66 0.869584
Target:  5'- cGCCgGAGC--ACGGCGGCga-GGUGCg -3'
miRNA:   3'- -CGG-UUCGacUGCCGCCGgcaCCACGg -5'
14132 5' -60 NC_003521.1 + 113859 0.66 0.869584
Target:  5'- uCCGAGCgUGGCGGUGguguaagcGCCGUcacGUGUCg -3'
miRNA:   3'- cGGUUCG-ACUGCCGC--------CGGCAc--CACGG- -5'
14132 5' -60 NC_003521.1 + 108270 0.66 0.869584
Target:  5'- aCCgGAGaaGACGGCGGCaccgagggcgGUGGUGgCg -3'
miRNA:   3'- cGG-UUCgaCUGCCGCCGg---------CACCACgG- -5'
14132 5' -60 NC_003521.1 + 196809 0.66 0.868887
Target:  5'- aGgUggGC-GAgGGCaGGCCGUGGUugagcagGCCc -3'
miRNA:   3'- -CgGuuCGaCUgCCG-CCGGCACCA-------CGG- -5'
14132 5' -60 NC_003521.1 + 80269 0.66 0.865373
Target:  5'- gGCgGAGCUugguucgaagacGACGGCGcGuCCGacgugcuggugacggUGGUGCUg -3'
miRNA:   3'- -CGgUUCGA------------CUGCCGC-C-GGC---------------ACCACGG- -5'
14132 5' -60 NC_003521.1 + 163970 0.66 0.862528
Target:  5'- cGCCGAa--GAUGGCGGUCGccGG-GCCu -3'
miRNA:   3'- -CGGUUcgaCUGCCGCCGGCa-CCaCGG- -5'
14132 5' -60 NC_003521.1 + 217902 0.66 0.862528
Target:  5'- aGCCAGG-UGAUu-UGGCCGUGGUGguCCu -3'
miRNA:   3'- -CGGUUCgACUGccGCCGGCACCAC--GG- -5'
14132 5' -60 NC_003521.1 + 117504 0.66 0.862528
Target:  5'- gGCgGGGCguACGGCGGuaugcacuCCGUGG-GCUa -3'
miRNA:   3'- -CGgUUCGacUGCCGCC--------GGCACCaCGG- -5'
14132 5' -60 NC_003521.1 + 127276 0.66 0.862528
Target:  5'- cCCAGGC--GCGGCacguccgacacGCCGUGGUGgCg -3'
miRNA:   3'- cGGUUCGacUGCCGc----------CGGCACCACgG- -5'
14132 5' -60 NC_003521.1 + 31617 0.66 0.862528
Target:  5'- cGUCAGG-UGGCGGaUGGCCGguaGGUGg- -3'
miRNA:   3'- -CGGUUCgACUGCC-GCCGGCa--CCACgg -5'
14132 5' -60 NC_003521.1 + 130153 0.66 0.862528
Target:  5'- gGCCAccgacgcGCUGGCcGaccgGGCCGUGaccGUGCCg -3'
miRNA:   3'- -CGGUu------CGACUGcCg---CCGGCAC---CACGG- -5'
14132 5' -60 NC_003521.1 + 105287 0.66 0.862528
Target:  5'- cGUCAacAGCgcguucAUGGCGGgCGUGGggacGCCg -3'
miRNA:   3'- -CGGU--UCGac----UGCCGCCgGCACCa---CGG- -5'
14132 5' -60 NC_003521.1 + 163875 0.66 0.855287
Target:  5'- cGCCAAcaacGC-GACGGaGGCa--GGUGCCg -3'
miRNA:   3'- -CGGUU----CGaCUGCCgCCGgcaCCACGG- -5'
14132 5' -60 NC_003521.1 + 93638 0.66 0.855287
Target:  5'- cGCCGccGCUaGugGGgGGuCCG-GGUuGCCa -3'
miRNA:   3'- -CGGUu-CGA-CugCCgCC-GGCaCCA-CGG- -5'
14132 5' -60 NC_003521.1 + 108938 0.66 0.855287
Target:  5'- uCCAGaucGCUGcccgacacgcGCGGCacgauGGCCGUGGccGCCu -3'
miRNA:   3'- cGGUU---CGAC----------UGCCG-----CCGGCACCa-CGG- -5'
14132 5' -60 NC_003521.1 + 31690 0.66 0.855287
Target:  5'- uCCAGGUgaaaguggGGCGGCGGCagcauGUGcgcGUGCUg -3'
miRNA:   3'- cGGUUCGa-------CUGCCGCCGg----CAC---CACGG- -5'
14132 5' -60 NC_003521.1 + 31841 0.66 0.855287
Target:  5'- cGCCGaagguGGCguugaagaaGACGGCGGC-GcGGUGCg -3'
miRNA:   3'- -CGGU-----UCGa--------CUGCCGCCGgCaCCACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.