miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14133 3' -54.3 NC_003521.1 + 31546 0.66 0.983965
Target:  5'- -aGCGUCUGCGaccacUCGgcgaagcccAGGuCGCGGGACa -3'
miRNA:   3'- caUGUAGACGC-----AGC---------UCCcGUGCCUUG- -5'
14133 3' -54.3 NC_003521.1 + 16553 0.66 0.982069
Target:  5'- cGUGCAcCUGgGU-GAGGGCGCGcGccuGCa -3'
miRNA:   3'- -CAUGUaGACgCAgCUCCCGUGC-Cu--UG- -5'
14133 3' -54.3 NC_003521.1 + 46324 0.66 0.982069
Target:  5'- cGgcCAUCUuguGCGagGAGGGCGCGucgucGGACg -3'
miRNA:   3'- -CauGUAGA---CGCagCUCCCGUGC-----CUUG- -5'
14133 3' -54.3 NC_003521.1 + 178440 0.66 0.980009
Target:  5'- cUGCGUCUcCGUgGuuccguugaaGGGGCGCGaGAGCg -3'
miRNA:   3'- cAUGUAGAcGCAgC----------UCCCGUGC-CUUG- -5'
14133 3' -54.3 NC_003521.1 + 212028 0.66 0.980009
Target:  5'- uGUGCcaa-GUGgcaugaGAGGGCGCGGGGCg -3'
miRNA:   3'- -CAUGuagaCGCag----CUCCCGUGCCUUG- -5'
14133 3' -54.3 NC_003521.1 + 111100 0.66 0.977778
Target:  5'- -cGCGcUCgGCGUCGAcGGGcCGCGGccGGCa -3'
miRNA:   3'- caUGU-AGaCGCAGCU-CCC-GUGCC--UUG- -5'
14133 3' -54.3 NC_003521.1 + 6534 0.66 0.977778
Target:  5'- -gGCgGUCUGCGUCccgccccAGGGCAgGGcGACg -3'
miRNA:   3'- caUG-UAGACGCAGc------UCCCGUgCC-UUG- -5'
14133 3' -54.3 NC_003521.1 + 108513 0.66 0.975368
Target:  5'- cUACcgCUGCGUCGuuGGCuucgACGGcGACc -3'
miRNA:   3'- cAUGuaGACGCAGCucCCG----UGCC-UUG- -5'
14133 3' -54.3 NC_003521.1 + 163251 0.67 0.973041
Target:  5'- -aACAUCaGCGUCGGGcucGGCAagaacagcgucacgaGGAACg -3'
miRNA:   3'- caUGUAGaCGCAGCUC---CCGUg--------------CCUUG- -5'
14133 3' -54.3 NC_003521.1 + 171665 0.67 0.972773
Target:  5'- -gGCGUCgggaGCGUCGGcGGCAUGacGAGCa -3'
miRNA:   3'- caUGUAGa---CGCAGCUcCCGUGC--CUUG- -5'
14133 3' -54.3 NC_003521.1 + 91198 0.67 0.963812
Target:  5'- gGUACcgCgggcGCGUCGuGGGCACaGuACg -3'
miRNA:   3'- -CAUGuaGa---CGCAGCuCCCGUGcCuUG- -5'
14133 3' -54.3 NC_003521.1 + 92090 0.67 0.963812
Target:  5'- -gGCA-CUGCa-CGAuGGGCACGGAGg -3'
miRNA:   3'- caUGUaGACGcaGCU-CCCGUGCCUUg -5'
14133 3' -54.3 NC_003521.1 + 119042 0.67 0.960413
Target:  5'- -gGCGggcgGCGUCGGGGuGC-UGGAGCg -3'
miRNA:   3'- caUGUaga-CGCAGCUCC-CGuGCCUUG- -5'
14133 3' -54.3 NC_003521.1 + 105320 0.67 0.960413
Target:  5'- -cACGUCUGuCGUCGucuguGGGCgACGuGACg -3'
miRNA:   3'- caUGUAGAC-GCAGCu----CCCG-UGCcUUG- -5'
14133 3' -54.3 NC_003521.1 + 82725 0.67 0.960413
Target:  5'- -aACGaggCUGCGUUGcGGGUccgcuuGCGGGACg -3'
miRNA:   3'- caUGUa--GACGCAGCuCCCG------UGCCUUG- -5'
14133 3' -54.3 NC_003521.1 + 216894 0.68 0.944637
Target:  5'- gGU-CGUCgcagGUGagGAGGGCGCGGuGGCa -3'
miRNA:   3'- -CAuGUAGa---CGCagCUCCCGUGCC-UUG- -5'
14133 3' -54.3 NC_003521.1 + 149747 0.68 0.94013
Target:  5'- -gGCAggucuUCUGCGgCGAGGGCggccgcGCGGuACg -3'
miRNA:   3'- caUGU-----AGACGCaGCUCCCG------UGCCuUG- -5'
14133 3' -54.3 NC_003521.1 + 155822 0.68 0.935394
Target:  5'- gGUGCGggcCUGCGUCaucgguuaccAGGGCACGGugucGCg -3'
miRNA:   3'- -CAUGUa--GACGCAGc---------UCCCGUGCCu---UG- -5'
14133 3' -54.3 NC_003521.1 + 102960 0.69 0.919793
Target:  5'- -gGCGcUCggGCGUCG-GGGCucugGCGGGGCg -3'
miRNA:   3'- caUGU-AGa-CGCAGCuCCCG----UGCCUUG- -5'
14133 3' -54.3 NC_003521.1 + 134949 0.69 0.919793
Target:  5'- -gGCAUCUGCGcccugaUCGuGGGCACGc--- -3'
miRNA:   3'- caUGUAGACGC------AGCuCCCGUGCcuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.