miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14133 3' -54.3 NC_003521.1 + 6534 0.66 0.977778
Target:  5'- -gGCgGUCUGCGUCccgccccAGGGCAgGGcGACg -3'
miRNA:   3'- caUG-UAGACGCAGc------UCCCGUgCC-UUG- -5'
14133 3' -54.3 NC_003521.1 + 13713 0.7 0.875387
Target:  5'- -aGCG-CUGCGcC-AGGGCugGGAACc -3'
miRNA:   3'- caUGUaGACGCaGcUCCCGugCCUUG- -5'
14133 3' -54.3 NC_003521.1 + 15413 0.7 0.885139
Target:  5'- aGUACAUCcagauuugagccggGUG-CGAGGGaCGCGGAAUa -3'
miRNA:   3'- -CAUGUAGa-------------CGCaGCUCCC-GUGCCUUG- -5'
14133 3' -54.3 NC_003521.1 + 16553 0.66 0.982069
Target:  5'- cGUGCAcCUGgGU-GAGGGCGCGcGccuGCa -3'
miRNA:   3'- -CAUGUaGACgCAgCUCCCGUGC-Cu--UG- -5'
14133 3' -54.3 NC_003521.1 + 23087 0.73 0.767336
Target:  5'- ---uGUCUGCGUCcguggccgggcgGGGGGC-CGGGACg -3'
miRNA:   3'- caugUAGACGCAG------------CUCCCGuGCCUUG- -5'
14133 3' -54.3 NC_003521.1 + 31546 0.66 0.983965
Target:  5'- -aGCGUCUGCGaccacUCGgcgaagcccAGGuCGCGGGACa -3'
miRNA:   3'- caUGUAGACGC-----AGC---------UCCcGUGCCUUG- -5'
14133 3' -54.3 NC_003521.1 + 36992 0.7 0.868167
Target:  5'- -gACAUCcGCGaCGAGGGCgucgcgGCGGAGu -3'
miRNA:   3'- caUGUAGaCGCaGCUCCCG------UGCCUUg -5'
14133 3' -54.3 NC_003521.1 + 37659 0.7 0.875387
Target:  5'- -gGCAuUCUGcCGgcaCGAcGGGCAUGGGACg -3'
miRNA:   3'- caUGU-AGAC-GCa--GCU-CCCGUGCCUUG- -5'
14133 3' -54.3 NC_003521.1 + 46324 0.66 0.982069
Target:  5'- cGgcCAUCUuguGCGagGAGGGCGCGucgucGGACg -3'
miRNA:   3'- -CauGUAGA---CGCagCUCCCGUGC-----CUUG- -5'
14133 3' -54.3 NC_003521.1 + 54095 0.7 0.868167
Target:  5'- cUACAUCgagccgGCGUCGAuaGGUgACGGAACg -3'
miRNA:   3'- cAUGUAGa-----CGCAGCUc-CCG-UGCCUUG- -5'
14133 3' -54.3 NC_003521.1 + 71269 0.71 0.845295
Target:  5'- -aACAUCgGCGgaggCGGGGGCcGCGGcACg -3'
miRNA:   3'- caUGUAGaCGCa---GCUCCCG-UGCCuUG- -5'
14133 3' -54.3 NC_003521.1 + 82725 0.67 0.960413
Target:  5'- -aACGaggCUGCGUUGcGGGUccgcuuGCGGGACg -3'
miRNA:   3'- caUGUa--GACGCAGCuCCCG------UGCCUUG- -5'
14133 3' -54.3 NC_003521.1 + 91198 0.67 0.963812
Target:  5'- gGUACcgCgggcGCGUCGuGGGCACaGuACg -3'
miRNA:   3'- -CAUGuaGa---CGCAGCuCCCGUGcCuUG- -5'
14133 3' -54.3 NC_003521.1 + 91316 0.71 0.837286
Target:  5'- aUGCGUgUGCGcgCGGGGGCACGcGcaGGCg -3'
miRNA:   3'- cAUGUAgACGCa-GCUCCCGUGC-C--UUG- -5'
14133 3' -54.3 NC_003521.1 + 92090 0.67 0.963812
Target:  5'- -gGCA-CUGCa-CGAuGGGCACGGAGg -3'
miRNA:   3'- caUGUaGACGcaGCU-CCCGUGCCUUg -5'
14133 3' -54.3 NC_003521.1 + 102960 0.69 0.919793
Target:  5'- -gGCGcUCggGCGUCG-GGGCucugGCGGGGCg -3'
miRNA:   3'- caUGU-AGa-CGCAGCuCCCG----UGCCUUG- -5'
14133 3' -54.3 NC_003521.1 + 104157 0.69 0.902111
Target:  5'- gGUGC-UCUGCGgCGGcGGCGCGGGucGCa -3'
miRNA:   3'- -CAUGuAGACGCaGCUcCCGUGCCU--UG- -5'
14133 3' -54.3 NC_003521.1 + 105320 0.67 0.960413
Target:  5'- -cACGUCUGuCGUCGucuguGGGCgACGuGACg -3'
miRNA:   3'- caUGUAGAC-GCAGCu----CCCG-UGCcUUG- -5'
14133 3' -54.3 NC_003521.1 + 105360 0.74 0.709741
Target:  5'- cUGCGUCcGCGUCGAcgGGGgGCGGAccgACg -3'
miRNA:   3'- cAUGUAGaCGCAGCU--CCCgUGCCU---UG- -5'
14133 3' -54.3 NC_003521.1 + 108513 0.66 0.975368
Target:  5'- cUACcgCUGCGUCGuuGGCuucgACGGcGACc -3'
miRNA:   3'- cAUGuaGACGCAGCucCCG----UGCC-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.