Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14133 | 3' | -54.3 | NC_003521.1 | + | 91316 | 0.71 | 0.837286 |
Target: 5'- aUGCGUgUGCGcgCGGGGGCACGcGcaGGCg -3' miRNA: 3'- cAUGUAgACGCa-GCUCCCGUGC-C--UUG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 31546 | 0.66 | 0.983965 |
Target: 5'- -aGCGUCUGCGaccacUCGgcgaagcccAGGuCGCGGGACa -3' miRNA: 3'- caUGUAGACGC-----AGC---------UCCcGUGCCUUG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 212028 | 0.66 | 0.980009 |
Target: 5'- uGUGCcaa-GUGgcaugaGAGGGCGCGGGGCg -3' miRNA: 3'- -CAUGuagaCGCag----CUCCCGUGCCUUG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 108513 | 0.66 | 0.975368 |
Target: 5'- cUACcgCUGCGUCGuuGGCuucgACGGcGACc -3' miRNA: 3'- cAUGuaGACGCAGCucCCG----UGCC-UUG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 163251 | 0.67 | 0.973041 |
Target: 5'- -aACAUCaGCGUCGGGcucGGCAagaacagcgucacgaGGAACg -3' miRNA: 3'- caUGUAGaCGCAGCUC---CCGUg--------------CCUUG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 91198 | 0.67 | 0.963812 |
Target: 5'- gGUACcgCgggcGCGUCGuGGGCACaGuACg -3' miRNA: 3'- -CAUGuaGa---CGCAGCuCCCGUGcCuUG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 119042 | 0.67 | 0.960413 |
Target: 5'- -gGCGggcgGCGUCGGGGuGC-UGGAGCg -3' miRNA: 3'- caUGUaga-CGCAGCUCC-CGuGCCUUG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 105320 | 0.67 | 0.960413 |
Target: 5'- -cACGUCUGuCGUCGucuguGGGCgACGuGACg -3' miRNA: 3'- caUGUAGAC-GCAGCu----CCCG-UGCcUUG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 82725 | 0.67 | 0.960413 |
Target: 5'- -aACGaggCUGCGUUGcGGGUccgcuuGCGGGACg -3' miRNA: 3'- caUGUa--GACGCAGCuCCCG------UGCCUUG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 149747 | 0.68 | 0.94013 |
Target: 5'- -gGCAggucuUCUGCGgCGAGGGCggccgcGCGGuACg -3' miRNA: 3'- caUGU-----AGACGCaGCUCCCG------UGCCuUG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 155822 | 0.68 | 0.935394 |
Target: 5'- gGUGCGggcCUGCGUCaucgguuaccAGGGCACGGugucGCg -3' miRNA: 3'- -CAUGUa--GACGCAGc---------UCCCGUGCCu---UG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 172653 | 0.69 | 0.902111 |
Target: 5'- cGUugGUCUGCGcgcUGGGGGUggagaACGGggUg -3' miRNA: 3'- -CAugUAGACGCa--GCUCCCG-----UGCCuuG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 138021 | 0.71 | 0.853115 |
Target: 5'- gGUGCGcgUGCGUCGcugccGGcGCACGGGGCu -3' miRNA: 3'- -CAUGUagACGCAGCu----CC-CGUGCCUUG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 71269 | 0.71 | 0.845295 |
Target: 5'- -aACAUCgGCGgaggCGGGGGCcGCGGcACg -3' miRNA: 3'- caUGUAGaCGCa---GCUCCCG-UGCCuUG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 54095 | 0.7 | 0.868167 |
Target: 5'- cUACAUCgagccgGCGUCGAuaGGUgACGGAACg -3' miRNA: 3'- cAUGUAGa-----CGCAGCUc-CCG-UGCCUUG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 36992 | 0.7 | 0.868167 |
Target: 5'- -gACAUCcGCGaCGAGGGCgucgcgGCGGAGu -3' miRNA: 3'- caUGUAGaCGCaGCUCCCG------UGCCUUg -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 23087 | 0.73 | 0.767336 |
Target: 5'- ---uGUCUGCGUCcguggccgggcgGGGGGC-CGGGACg -3' miRNA: 3'- caugUAGACGCAG------------CUCCCGuGCCUUG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 146962 | 0.73 | 0.767336 |
Target: 5'- --cCAUCcGCGUCaGAGGGCGggaGGAACg -3' miRNA: 3'- cauGUAGaCGCAG-CUCCCGUg--CCUUG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 105360 | 0.74 | 0.709741 |
Target: 5'- cUGCGUCcGCGUCGAcgGGGgGCGGAccgACg -3' miRNA: 3'- cAUGUAGaCGCAGCU--CCCgUGCCU---UG- -5' |
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14133 | 3' | -54.3 | NC_003521.1 | + | 46324 | 0.66 | 0.982069 |
Target: 5'- cGgcCAUCUuguGCGagGAGGGCGCGucgucGGACg -3' miRNA: 3'- -CauGUAGA---CGCagCUCCCGUGC-----CUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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