miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14133 5' -56 NC_003521.1 + 207166 0.66 0.948959
Target:  5'- aGAuuCCaggGCCGUCUGAauccaGCGGGAu -3'
miRNA:   3'- -UUuuGGgcaCGGCAGACUg----CGUCCUu -5'
14133 5' -56 NC_003521.1 + 85506 0.66 0.948959
Target:  5'- cGGGACCCGcgGUCGUCUcACcCAGGAc -3'
miRNA:   3'- -UUUUGGGCa-CGGCAGAcUGcGUCCUu -5'
14133 5' -56 NC_003521.1 + 171464 0.66 0.948959
Target:  5'- gGAAACCaCGUGCgGgcgcACGCAGGAc -3'
miRNA:   3'- -UUUUGG-GCACGgCagacUGCGUCCUu -5'
14133 5' -56 NC_003521.1 + 121024 0.66 0.948959
Target:  5'- ----aCCGUGUCGccccgCUGGCGCcGGAAg -3'
miRNA:   3'- uuuugGGCACGGCa----GACUGCGuCCUU- -5'
14133 5' -56 NC_003521.1 + 102485 0.66 0.944663
Target:  5'- aGAGGCCCGagacGCCGUCgcgcaGcCGCAGGu- -3'
miRNA:   3'- -UUUUGGGCa---CGGCAGa----CuGCGUCCuu -5'
14133 5' -56 NC_003521.1 + 100317 0.66 0.944663
Target:  5'- cGAGACCCc-GCUGagUGACGCGGGc- -3'
miRNA:   3'- -UUUUGGGcaCGGCagACUGCGUCCuu -5'
14133 5' -56 NC_003521.1 + 109876 0.66 0.930389
Target:  5'- gAAGGCCuugCGUGCCaUCUccacGGCGCGGGGGu -3'
miRNA:   3'- -UUUUGG---GCACGGcAGA----CUGCGUCCUU- -5'
14133 5' -56 NC_003521.1 + 87703 0.67 0.919705
Target:  5'- aGAGGCCCGUGuuGUa-GAUGCAGa-- -3'
miRNA:   3'- -UUUUGGGCACggCAgaCUGCGUCcuu -5'
14133 5' -56 NC_003521.1 + 16819 0.67 0.914012
Target:  5'- cGGGCCC--GCCG-CUGcCGCAGGAGg -3'
miRNA:   3'- uUUUGGGcaCGGCaGACuGCGUCCUU- -5'
14133 5' -56 NC_003521.1 + 238353 0.67 0.90869
Target:  5'- -uGGCCgGcGCCGUCgcguacccauagcggGGCGCGGGGAu -3'
miRNA:   3'- uuUUGGgCaCGGCAGa--------------CUGCGUCCUU- -5'
14133 5' -56 NC_003521.1 + 93943 0.68 0.882106
Target:  5'- --uGCCCGccGUCGUCUGGCuuccuccucuggGCGGGAGg -3'
miRNA:   3'- uuuUGGGCa-CGGCAGACUG------------CGUCCUU- -5'
14133 5' -56 NC_003521.1 + 236182 0.68 0.867797
Target:  5'- ---cCCCGUGauCCG-CUGGCGUGGGAGc -3'
miRNA:   3'- uuuuGGGCAC--GGCaGACUGCGUCCUU- -5'
14133 5' -56 NC_003521.1 + 193146 0.68 0.860328
Target:  5'- uAAAugCCGUGUCGUC-GGCGCacagcaucucAGGAGc -3'
miRNA:   3'- -UUUugGGCACGGCAGaCUGCG----------UCCUU- -5'
14133 5' -56 NC_003521.1 + 205583 0.68 0.860328
Target:  5'- -cGACCuUGUGCCGUCUcGCGCcccgAGGAc -3'
miRNA:   3'- uuUUGG-GCACGGCAGAcUGCG----UCCUu -5'
14133 5' -56 NC_003521.1 + 91974 0.68 0.860328
Target:  5'- cGGAACCCGgcgGCCGaUCcGGCGCGaacGGAGc -3'
miRNA:   3'- -UUUUGGGCa--CGGC-AGaCUGCGU---CCUU- -5'
14133 5' -56 NC_003521.1 + 115492 0.69 0.828499
Target:  5'- uGGGCCgCGUGUCGcUCUGugGCcGGAc -3'
miRNA:   3'- uUUUGG-GCACGGC-AGACugCGuCCUu -5'
14133 5' -56 NC_003521.1 + 139892 0.69 0.828499
Target:  5'- cGAACCCGUGCCGcggaaaUCccGACGCGagcGGAGc -3'
miRNA:   3'- uUUUGGGCACGGC------AGa-CUGCGU---CCUU- -5'
14133 5' -56 NC_003521.1 + 110278 0.69 0.820086
Target:  5'- -cAGCUCGUGCUucuggGUCUGGCGCAGcacGAAg -3'
miRNA:   3'- uuUUGGGCACGG-----CAGACUGCGUC---CUU- -5'
14133 5' -56 NC_003521.1 + 65433 0.7 0.79745
Target:  5'- --cACCUGcGCCGggucauggguccccgUCUGAUGCAGGAGa -3'
miRNA:   3'- uuuUGGGCaCGGC---------------AGACUGCGUCCUU- -5'
14133 5' -56 NC_003521.1 + 198641 0.7 0.793876
Target:  5'- gGAAACgCCGUGCUGUCUGcACGUGGu-- -3'
miRNA:   3'- -UUUUG-GGCACGGCAGAC-UGCGUCcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.