Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14133 | 5' | -56 | NC_003521.1 | + | 115279 | 1.04 | 0.007956 |
Target: 5'- gAAAACCCGUGCCGUCUGACGCAGGAAg -3' miRNA: 3'- -UUUUGGGCACGGCAGACUGCGUCCUU- -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 225570 | 0.74 | 0.557608 |
Target: 5'- gGGGACCCGUGUCGUCcUGGCGCucGGc- -3' miRNA: 3'- -UUUUGGGCACGGCAG-ACUGCGu-CCuu -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 235822 | 0.72 | 0.688571 |
Target: 5'- aGAAGCgCGUcagCGUCUGACGCGGGAu -3' miRNA: 3'- -UUUUGgGCAcg-GCAGACUGCGUCCUu -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 150414 | 0.71 | 0.708475 |
Target: 5'- cGAGCCCGgacCCGUCUGucgcgUGCAGGAGa -3' miRNA: 3'- uUUUGGGCac-GGCAGACu----GCGUCCUU- -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 116045 | 0.71 | 0.718336 |
Target: 5'- ---uCCCgGUGCCa-CUGGCGCAGGAGa -3' miRNA: 3'- uuuuGGG-CACGGcaGACUGCGUCCUU- -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 3678 | 0.71 | 0.737834 |
Target: 5'- cGGGACCCucGUCGgaugCUGACGCGGGAu -3' miRNA: 3'- -UUUUGGGcaCGGCa---GACUGCGUCCUu -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 49070 | 0.7 | 0.784843 |
Target: 5'- cAGGACCCGgugGaCCGUCgGACGgGGGGc -3' miRNA: 3'- -UUUUGGGCa--C-GGCAGaCUGCgUCCUu -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 198641 | 0.7 | 0.793876 |
Target: 5'- gGAAACgCCGUGCUGUCUGcACGUGGu-- -3' miRNA: 3'- -UUUUG-GGCACGGCAGAC-UGCGUCcuu -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 65433 | 0.7 | 0.79745 |
Target: 5'- --cACCUGcGCCGggucauggguccccgUCUGAUGCAGGAGa -3' miRNA: 3'- uuuUGGGCaCGGC---------------AGACUGCGUCCUU- -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 110278 | 0.69 | 0.820086 |
Target: 5'- -cAGCUCGUGCUucuggGUCUGGCGCAGcacGAAg -3' miRNA: 3'- uuUUGGGCACGG-----CAGACUGCGUC---CUU- -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 115492 | 0.69 | 0.828499 |
Target: 5'- uGGGCCgCGUGUCGcUCUGugGCcGGAc -3' miRNA: 3'- uUUUGG-GCACGGC-AGACugCGuCCUu -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 139892 | 0.69 | 0.828499 |
Target: 5'- cGAACCCGUGCCGcggaaaUCccGACGCGagcGGAGc -3' miRNA: 3'- uUUUGGGCACGGC------AGa-CUGCGU---CCUU- -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 193146 | 0.68 | 0.860328 |
Target: 5'- uAAAugCCGUGUCGUC-GGCGCacagcaucucAGGAGc -3' miRNA: 3'- -UUUugGGCACGGCAGaCUGCG----------UCCUU- -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 205583 | 0.68 | 0.860328 |
Target: 5'- -cGACCuUGUGCCGUCUcGCGCcccgAGGAc -3' miRNA: 3'- uuUUGG-GCACGGCAGAcUGCG----UCCUu -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 91974 | 0.68 | 0.860328 |
Target: 5'- cGGAACCCGgcgGCCGaUCcGGCGCGaacGGAGc -3' miRNA: 3'- -UUUUGGGCa--CGGC-AGaCUGCGU---CCUU- -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 236182 | 0.68 | 0.867797 |
Target: 5'- ---cCCCGUGauCCG-CUGGCGUGGGAGc -3' miRNA: 3'- uuuuGGGCAC--GGCaGACUGCGUCCUU- -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 93943 | 0.68 | 0.882106 |
Target: 5'- --uGCCCGccGUCGUCUGGCuuccuccucuggGCGGGAGg -3' miRNA: 3'- uuuUGGGCa-CGGCAGACUG------------CGUCCUU- -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 238353 | 0.67 | 0.90869 |
Target: 5'- -uGGCCgGcGCCGUCgcguacccauagcggGGCGCGGGGAu -3' miRNA: 3'- uuUUGGgCaCGGCAGa--------------CUGCGUCCUU- -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 16819 | 0.67 | 0.914012 |
Target: 5'- cGGGCCC--GCCG-CUGcCGCAGGAGg -3' miRNA: 3'- uUUUGGGcaCGGCaGACuGCGUCCUU- -5' |
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14133 | 5' | -56 | NC_003521.1 | + | 87703 | 0.67 | 0.919705 |
Target: 5'- aGAGGCCCGUGuuGUa-GAUGCAGa-- -3' miRNA: 3'- -UUUUGGGCACggCAgaCUGCGUCcuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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