miRNA display CGI


Results 41 - 60 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 150727 0.66 0.704978
Target:  5'- cGGC-CGUG-GGCcACguccugGGCCgGCUGCCCg -3'
miRNA:   3'- -UCGuGCACgCCGaUG------CCGG-CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 141301 0.66 0.677012
Target:  5'- uGCAgGUGCGG--GCGGC-GCCccggaGCCCu -3'
miRNA:   3'- uCGUgCACGCCgaUGCCGgCGG-----CGGG- -5'
14136 3' -63.3 NC_003521.1 + 224602 0.66 0.695699
Target:  5'- cGCACucggccagGCGGCa--GGgCGCCGCCa -3'
miRNA:   3'- uCGUGca------CGCCGaugCCgGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 168936 0.66 0.686375
Target:  5'- gGGCGCa---GGC-AgGGCCGCCGCUg -3'
miRNA:   3'- -UCGUGcacgCCGaUgCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 33197 0.66 0.677012
Target:  5'- aGGUgaAgGUGCaGGC--CGGCgaGCCGCCCa -3'
miRNA:   3'- -UCG--UgCACG-CCGauGCCGg-CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 34512 0.66 0.695699
Target:  5'- cGCAgGUaGCGGCcGCgGGCCGagaCGCgCg -3'
miRNA:   3'- uCGUgCA-CGCCGaUG-CCGGCg--GCGgG- -5'
14136 3' -63.3 NC_003521.1 + 114838 0.66 0.714205
Target:  5'- cGCAcCGUGCucauGCUGCGccuuagcguGCUGCCGCUg -3'
miRNA:   3'- uCGU-GCACGc---CGAUGC---------CGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 220194 0.66 0.690109
Target:  5'- cAGCGCGcgGCucuccgagcacaucuGGaagAUGGCCGCCGUCa -3'
miRNA:   3'- -UCGUGCa-CG---------------CCga-UGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 197365 0.66 0.723372
Target:  5'- uGGCGuacauCGUuuugGagaGGCUcUGGCuCGCCGCCCg -3'
miRNA:   3'- -UCGU-----GCA----Cg--CCGAuGCCG-GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 145377 0.66 0.695699
Target:  5'- gGGCGCGaGcCGGUgcgcgACGGCCuggGCCuGCUCa -3'
miRNA:   3'- -UCGUGCaC-GCCGa----UGCCGG---CGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 91261 0.66 0.733378
Target:  5'- gGGCACGgGCGGgaAaccggggaagaagaaGGagcgcgCGCCGCCCg -3'
miRNA:   3'- -UCGUGCaCGCCgaUg--------------CCg-----GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 221624 0.66 0.714205
Target:  5'- cGCAauCGUGCauGGCcuuaGCuCGCCGCCCg -3'
miRNA:   3'- uCGU--GCACG--CCGaugcCG-GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 149658 0.66 0.686375
Target:  5'- -cCugGUGCgGGCUGCccgacaucgugGGCC-CCGCCg -3'
miRNA:   3'- ucGugCACG-CCGAUG-----------CCGGcGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 223091 0.66 0.694768
Target:  5'- cAGCgaACGUGCGuagaucuGCgggAUGGCgGCCGUCUc -3'
miRNA:   3'- -UCG--UGCACGC-------CGa--UGCCGgCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 164819 0.66 0.705903
Target:  5'- gAGCGCccGCGGgggaggaggaaccgGCGGCCGgCGCCa -3'
miRNA:   3'- -UCGUGcaCGCCga------------UGCCGGCgGCGGg -5'
14136 3' -63.3 NC_003521.1 + 201351 0.66 0.714205
Target:  5'- -cCACGagGCGGCgACGGgacacgaaCCGCUGCCg -3'
miRNA:   3'- ucGUGCa-CGCCGaUGCC--------GGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 145864 0.66 0.677012
Target:  5'- gGGCcCG-GCGGCggGCGGCgCcgacgacgagGCCGCCg -3'
miRNA:   3'- -UCGuGCaCGCCGa-UGCCG-G----------CGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 160773 0.66 0.677012
Target:  5'- cGCGCGUGCcGCcgGCGGCaCGCgGgCg -3'
miRNA:   3'- uCGUGCACGcCGa-UGCCG-GCGgCgGg -5'
14136 3' -63.3 NC_003521.1 + 56425 0.66 0.677012
Target:  5'- cGGUACucGCGGUcgaaGGCCGCCucgugGCCCa -3'
miRNA:   3'- -UCGUGcaCGCCGaug-CCGGCGG-----CGGG- -5'
14136 3' -63.3 NC_003521.1 + 72532 0.66 0.695699
Target:  5'- gAGCuGCGgagGCGGCggcgACGGUguCGUCGUCUc -3'
miRNA:   3'- -UCG-UGCa--CGCCGa---UGCCG--GCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.