miRNA display CGI


Results 81 - 100 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 223404 0.66 0.714205
Target:  5'- gGGC-CGUGUGGCgcccCGGCgCGgCGUCa -3'
miRNA:   3'- -UCGuGCACGCCGau--GCCG-GCgGCGGg -5'
14136 3' -63.3 NC_003521.1 + 221624 0.66 0.714205
Target:  5'- cGCAauCGUGCauGGCcuuaGCuCGCCGCCCg -3'
miRNA:   3'- uCGU--GCACG--CCGaugcCG-GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 150727 0.66 0.704978
Target:  5'- cGGC-CGUG-GGCcACguccugGGCCgGCUGCCCg -3'
miRNA:   3'- -UCGuGCACgCCGaUG------CCGG-CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 145377 0.66 0.695699
Target:  5'- gGGCGCGaGcCGGUgcgcgACGGCCuggGCCuGCUCa -3'
miRNA:   3'- -UCGUGCaC-GCCGa----UGCCGG---CGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 115938 0.66 0.723372
Target:  5'- cAGUACGguuggggcgucuUGCGGCUcaguACGGC-GuuGUCCg -3'
miRNA:   3'- -UCGUGC------------ACGCCGA----UGCCGgCggCGGG- -5'
14136 3' -63.3 NC_003521.1 + 145053 0.66 0.720628
Target:  5'- cGGCACGaugaccgucuggGCGGCUcggacgacuaccuGUGGCUcaGCCGCCUg -3'
miRNA:   3'- -UCGUGCa-----------CGCCGA-------------UGCCGG--CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 197365 0.66 0.723372
Target:  5'- uGGCGuacauCGUuuugGagaGGCUcUGGCuCGCCGCCCg -3'
miRNA:   3'- -UCGU-----GCA----Cg--CCGAuGCCG-GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 103549 0.66 0.714205
Target:  5'- cGUGCGUGgGGaugACggGGCCcagGUCGCCCg -3'
miRNA:   3'- uCGUGCACgCCga-UG--CCGG---CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 114838 0.66 0.714205
Target:  5'- cGCAcCGUGCucauGCUGCGccuuagcguGCUGCCGCUg -3'
miRNA:   3'- uCGU-GCACGc---CGAUGC---------CGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 145713 0.66 0.695699
Target:  5'- aGGcCACGcucaaGCGcGC-GCGGCCGCucaaggCGCCCg -3'
miRNA:   3'- -UC-GUGCa----CGC-CGaUGCCGGCG------GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 77454 0.66 0.732472
Target:  5'- cGUugGUGCccGUgacACuGCCGCCGCCg -3'
miRNA:   3'- uCGugCACGc-CGa--UGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 24189 0.66 0.732472
Target:  5'- aAGC-CGgGCGGCauggGCGGaaCGUCGUCCa -3'
miRNA:   3'- -UCGuGCaCGCCGa---UGCCg-GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 240109 0.66 0.732472
Target:  5'- uGCACGuUGgGGUggGCGuGCgGUCGUCCc -3'
miRNA:   3'- uCGUGC-ACgCCGa-UGC-CGgCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 130277 0.66 0.723372
Target:  5'- gGGCGCccucucCGGCUACcugggcgaGGCCGCgGCgCCg -3'
miRNA:   3'- -UCGUGcac---GCCGAUG--------CCGGCGgCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 59648 0.66 0.695699
Target:  5'- cGUugGUGCGGCagACGcUgGCgCGCCUg -3'
miRNA:   3'- uCGugCACGCCGa-UGCcGgCG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 112439 0.66 0.722458
Target:  5'- cGCucagGCGGCccagGCGGCCcugguggGCgCGCCCg -3'
miRNA:   3'- uCGugcaCGCCGa---UGCCGG-------CG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 116325 0.66 0.704978
Target:  5'- -cUACGUggGCGGCUuccucacgcgcuACGaCCaGCCGCCCg -3'
miRNA:   3'- ucGUGCA--CGCCGA------------UGCcGG-CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 91687 0.66 0.704978
Target:  5'- cAGCGgGcuccuggGCGuGCUGCGGUCugcguGCCGCUCc -3'
miRNA:   3'- -UCGUgCa------CGC-CGAUGCCGG-----CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 140009 0.66 0.704978
Target:  5'- gGGCGagugguaGUcGCGGUaGCGGCCGCagaagGCCa -3'
miRNA:   3'- -UCGUg------CA-CGCCGaUGCCGGCGg----CGGg -5'
14136 3' -63.3 NC_003521.1 + 155660 0.66 0.704053
Target:  5'- uGCugGgugGCGGCggaGGUcuggacgauucauCGCCGCCg -3'
miRNA:   3'- uCGugCa--CGCCGaugCCG-------------GCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.