miRNA display CGI


Results 101 - 120 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 91857 0.66 0.714205
Target:  5'- cAGCAC--GCGGaugAUGG-CGCUGCCCu -3'
miRNA:   3'- -UCGUGcaCGCCga-UGCCgGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 124487 0.66 0.714205
Target:  5'- cGGCugGUcguaGCGcGUga-GGaaGCCGCCCa -3'
miRNA:   3'- -UCGugCA----CGC-CGaugCCggCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 91899 0.66 0.677012
Target:  5'- cAGCACG-GC-GCUGCGGUgcucgaUGCCGCg- -3'
miRNA:   3'- -UCGUGCaCGcCGAUGCCG------GCGGCGgg -5'
14136 3' -63.3 NC_003521.1 + 91261 0.66 0.733378
Target:  5'- gGGCACGgGCGGgaAaccggggaagaagaaGGagcgcgCGCCGCCCg -3'
miRNA:   3'- -UCGUGCaCGCCgaUg--------------CCg-----GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 127812 0.66 0.724285
Target:  5'- cAGCACGUGCcggucgaaGGUgcccgggugguagugGCGcCCGCCGCUg -3'
miRNA:   3'- -UCGUGCACG--------CCGa--------------UGCcGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 173239 0.66 0.677012
Target:  5'- -cCGCGUGUuggcgacucuGGCccGCGGggcCCGCCGCCUg -3'
miRNA:   3'- ucGUGCACG----------CCGa-UGCC---GGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 171301 0.66 0.701273
Target:  5'- gGGCugGaagGCGGUgcugggccucaacGCGGCCugcGCCGUCUa -3'
miRNA:   3'- -UCGugCa--CGCCGa------------UGCCGG---CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 216121 0.66 0.732472
Target:  5'- gAGCGCGgcGCGGa---GGCCGCgGCa- -3'
miRNA:   3'- -UCGUGCa-CGCCgaugCCGGCGgCGgg -5'
14136 3' -63.3 NC_003521.1 + 87472 0.66 0.723372
Target:  5'- cAGCGC-UGUaGCgGCGGCCGaaggUGCCCa -3'
miRNA:   3'- -UCGUGcACGcCGaUGCCGGCg---GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 80865 0.66 0.732472
Target:  5'- aGGCugGguaGCuGGCacuccucggUGCGGUgGuuGCCCa -3'
miRNA:   3'- -UCGugCa--CG-CCG---------AUGCCGgCggCGGG- -5'
14136 3' -63.3 NC_003521.1 + 66581 0.66 0.732472
Target:  5'- cGCaACGUGCGucugaGCUccgACGcGCCcCUGCCCg -3'
miRNA:   3'- uCG-UGCACGC-----CGA---UGC-CGGcGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 60713 0.66 0.723372
Target:  5'- cGGCGCGgGUcGC-ACcacGCCGCUGCCCu -3'
miRNA:   3'- -UCGUGCaCGcCGaUGc--CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 115938 0.66 0.723372
Target:  5'- cAGUACGguuggggcgucuUGCGGCUcaguACGGC-GuuGUCCg -3'
miRNA:   3'- -UCGUGC------------ACGCCGA----UGCCGgCggCGGG- -5'
14136 3' -63.3 NC_003521.1 + 225175 0.66 0.732472
Target:  5'- cGGCGCuGUGCuGCcgcucgaagAUGGCCuugaaGUCGCCCa -3'
miRNA:   3'- -UCGUG-CACGcCGa--------UGCCGG-----CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 149619 0.66 0.732472
Target:  5'- uGCGCGaaaCGGCgcUGGaCGCCGCCg -3'
miRNA:   3'- uCGUGCac-GCCGauGCCgGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 87910 0.66 0.732472
Target:  5'- gAGCaACGacuccUGGCU--GGCCGCCGCgCCg -3'
miRNA:   3'- -UCG-UGCac---GCCGAugCCGGCGGCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 22412 0.66 0.704978
Target:  5'- cGCugGccaugcugcGCGGCgu-GGCCGaguaCCGCCCg -3'
miRNA:   3'- uCGugCa--------CGCCGaugCCGGC----GGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 129182 0.66 0.704978
Target:  5'- cGUGCG-GCGGUUugGGUuuCGCCGgCg -3'
miRNA:   3'- uCGUGCaCGCCGAugCCG--GCGGCgGg -5'
14136 3' -63.3 NC_003521.1 + 76535 0.66 0.704978
Target:  5'- uGGC---UGCuGCUGCGGUgGCUGUCCa -3'
miRNA:   3'- -UCGugcACGcCGAUGCCGgCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 14390 0.66 0.704978
Target:  5'- gAGCugGcGC-GCUACGGCgUGUCGCgCu -3'
miRNA:   3'- -UCGugCaCGcCGAUGCCG-GCGGCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.