miRNA display CGI


Results 121 - 140 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 33197 0.66 0.677012
Target:  5'- aGGUgaAgGUGCaGGC--CGGCgaGCCGCCCa -3'
miRNA:   3'- -UCG--UgCACG-CCGauGCCGg-CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 139440 0.66 0.686375
Target:  5'- uGGC-CGUcaaGCGGCgcgACGGCuCGCgCaCCCg -3'
miRNA:   3'- -UCGuGCA---CGCCGa--UGCCG-GCG-GcGGG- -5'
14136 3' -63.3 NC_003521.1 + 44384 0.66 0.72702
Target:  5'- cGCGCGgcaGcCGGCcgacccggGCGacagcgacugucuguGCCGCUGCCCg -3'
miRNA:   3'- uCGUGCa--C-GCCGa-------UGC---------------CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 181388 0.66 0.723372
Target:  5'- gAGCuCGcUGcCGGCgGCGG-CGCCGCUg -3'
miRNA:   3'- -UCGuGC-AC-GCCGaUGCCgGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 118005 0.66 0.714205
Target:  5'- --gACGguaGCGGCgGCGuGUCGCUGCCg -3'
miRNA:   3'- ucgUGCa--CGCCGaUGC-CGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 13192 0.66 0.732472
Target:  5'- --gGCGUGCcGCUcgGGCCGCCGUg- -3'
miRNA:   3'- ucgUGCACGcCGAugCCGGCGGCGgg -5'
14136 3' -63.3 NC_003521.1 + 172386 0.66 0.714205
Target:  5'- cGGCACGcgguugaGgGGCgccgGCGgaGCCGUCGCCg -3'
miRNA:   3'- -UCGUGCa------CgCCGa---UGC--CGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 36766 0.66 0.723372
Target:  5'- uGGUGCGacUGCGGCgacugGCagGGCCacgcgcugcggaGCCGCUCg -3'
miRNA:   3'- -UCGUGC--ACGCCGa----UG--CCGG------------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 169914 0.66 0.732472
Target:  5'- uGGCGC-UGaCGGCUcugACGGCgcUGCUgGCCCu -3'
miRNA:   3'- -UCGUGcAC-GCCGA---UGCCG--GCGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 131755 0.66 0.732472
Target:  5'- uGCACGa-CGGCgaggACGuGCUGuUCGCCCu -3'
miRNA:   3'- uCGUGCacGCCGa---UGC-CGGC-GGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 193305 0.66 0.732472
Target:  5'- gGGaCACGcUGCucaGCUACGGCUGCaucgcgGUCCg -3'
miRNA:   3'- -UC-GUGC-ACGc--CGAUGCCGGCGg-----CGGG- -5'
14136 3' -63.3 NC_003521.1 + 127812 0.66 0.724285
Target:  5'- cAGCACGUGCcggucgaaGGUgcccgggugguagugGCGcCCGCCGCUg -3'
miRNA:   3'- -UCGUGCACG--------CCGa--------------UGCcGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 124487 0.66 0.714205
Target:  5'- cGGCugGUcguaGCGcGUga-GGaaGCCGCCCa -3'
miRNA:   3'- -UCGugCA----CGC-CGaugCCggCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 185356 0.66 0.714205
Target:  5'- cGGCAag-GCGGCgcaGuGCCucuuccagcgcGCCGCCCa -3'
miRNA:   3'- -UCGUgcaCGCCGaugC-CGG-----------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 8898 0.67 0.647818
Target:  5'- uGGuCugGUaGCuGGCUACGgcgcgggagaagaGCCGCUGCCg -3'
miRNA:   3'- -UC-GugCA-CG-CCGAUGC-------------CGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 203592 0.67 0.648763
Target:  5'- cGCaACGUGCaGUUgaGCGcGUCGCCGCUg -3'
miRNA:   3'- uCG-UGCACGcCGA--UGC-CGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 27485 0.67 0.648763
Target:  5'- cAGCGCGUuauccucuaCGGCUACGGC-GCCaUCCu -3'
miRNA:   3'- -UCGUGCAc--------GCCGAUGCCGgCGGcGGG- -5'
14136 3' -63.3 NC_003521.1 + 74697 0.67 0.629862
Target:  5'- cAGCgACG-GCGGCgccGCGGCaGCgGCUCc -3'
miRNA:   3'- -UCG-UGCaCGCCGa--UGCCGgCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 201557 0.67 0.624191
Target:  5'- uGGCGCG-GCuguaucgguccaaccGGCUGgGGCUGaaCGCCCg -3'
miRNA:   3'- -UCGUGCaCG---------------CCGAUgCCGGCg-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 37474 0.67 0.648763
Target:  5'- aGGCGUGUGUGGacGCGGuCUGCCcCCCg -3'
miRNA:   3'- -UCGUGCACGCCgaUGCC-GGCGGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.