miRNA display CGI


Results 61 - 80 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 74590 0.73 0.305696
Target:  5'- cGGCGCGgcgucccGCGGCcgGCGcgccucGCCGCCGCgCCa -3'
miRNA:   3'- -UCGUGCa------CGCCGa-UGC------CGGCGGCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 75063 0.73 0.312259
Target:  5'- cGGCACGaUGaugGGCaaGCcGCCGCCGCCCu -3'
miRNA:   3'- -UCGUGC-ACg--CCGa-UGcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 174452 0.73 0.312259
Target:  5'- cGCugGUGUcGCUGCucGCCGCCGgCCa -3'
miRNA:   3'- uCGugCACGcCGAUGc-CGGCGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 162669 0.73 0.312259
Target:  5'- cAGgAUGUGCcucGUUcGCGGCCGCCGCCg -3'
miRNA:   3'- -UCgUGCACGc--CGA-UGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 163384 0.73 0.318927
Target:  5'- gGGCACcaacgGCGGCauccucuCGGCCGUgGCCCc -3'
miRNA:   3'- -UCGUGca---CGCCGau-----GCCGGCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 205193 0.73 0.325702
Target:  5'- cAGCGCGUGCGGgacCUGCGaaaCGCuCGCCUg -3'
miRNA:   3'- -UCGUGCACGCC---GAUGCcg-GCG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 122060 0.73 0.332583
Target:  5'- gGGCgACGUGC-GC-ACGGCCGCCGacuucaCCa -3'
miRNA:   3'- -UCG-UGCACGcCGaUGCCGGCGGCg-----GG- -5'
14136 3' -63.3 NC_003521.1 + 87615 0.72 0.3837
Target:  5'- uAGCAgGUGUGGCaGCagguGCCGCCGCa- -3'
miRNA:   3'- -UCGUgCACGCCGaUGc---CGGCGGCGgg -5'
14136 3' -63.3 NC_003521.1 + 150653 0.72 0.376086
Target:  5'- uGCGCGacgaagGCGGCUcuccgGCGGCggCGCCGCUg -3'
miRNA:   3'- uCGUGCa-----CGCCGA-----UGCCG--GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 130943 0.72 0.376086
Target:  5'- cGCACGcaguuacugGUGGCccc-GCCGCCGCCCg -3'
miRNA:   3'- uCGUGCa--------CGCCGaugcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 60668 0.72 0.376086
Target:  5'- gGGCACGaUGCucuucguGCUGCGGCCGCgCGggggaCCCg -3'
miRNA:   3'- -UCGUGC-ACGc------CGAUGCCGGCG-GC-----GGG- -5'
14136 3' -63.3 NC_003521.1 + 127419 0.72 0.371567
Target:  5'- cAGCGCGUucacguaggccgccaGCGGCUcguCGGCCaGCUGgCCg -3'
miRNA:   3'- -UCGUGCA---------------CGCCGAu--GCCGG-CGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 70650 0.72 0.391416
Target:  5'- cGCACGcUGCGGCUggugcuGCaGCUGCUGCUg -3'
miRNA:   3'- uCGUGC-ACGCCGA------UGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 138023 0.72 0.391416
Target:  5'- uGCGCGUGCGucGCUGCcggcgcacggGGCUguggGUCGCCCg -3'
miRNA:   3'- uCGUGCACGC--CGAUG----------CCGG----CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 186860 0.72 0.391416
Target:  5'- cGGCgGCGUGCaGC-ACGGCuCGUCgGCCCa -3'
miRNA:   3'- -UCG-UGCACGcCGaUGCCG-GCGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 74183 0.72 0.391416
Target:  5'- uGCGCc-GCGGCgccCGGCgCGCgGCCCg -3'
miRNA:   3'- uCGUGcaCGCCGau-GCCG-GCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 164442 0.72 0.394531
Target:  5'- cAGCGCcaccGCGGCcGCGGCCgucacggucgccgcuGCCGCCg -3'
miRNA:   3'- -UCGUGca--CGCCGaUGCCGG---------------CGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 200301 0.72 0.376086
Target:  5'- cGGCgGCGUGCGGCg--GGCCGgCCGgUCg -3'
miRNA:   3'- -UCG-UGCACGCCGaugCCGGC-GGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 102784 0.72 0.346664
Target:  5'- uGCGCGaUGaCGcGCcgGCGGCCGCCaGCUCg -3'
miRNA:   3'- uCGUGC-AC-GC-CGa-UGCCGGCGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 78138 0.72 0.368575
Target:  5'- gGGCGCGUuaGCGGCgGCGGCCGCgaacgaggcaCGaUCCu -3'
miRNA:   3'- -UCGUGCA--CGCCGaUGCCGGCG----------GC-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.