miRNA display CGI


Results 101 - 120 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 74932 0.72 0.391416
Target:  5'- cAGCGCGggGUGGUguac-CCGCCGCCCg -3'
miRNA:   3'- -UCGUGCa-CGCCGaugccGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 16239 0.72 0.386775
Target:  5'- gAGUGCGaaauguaccucagccUGCGGCUGC-GCUGCCGCUg -3'
miRNA:   3'- -UCGUGC---------------ACGCCGAUGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 98454 0.72 0.3837
Target:  5'- gGGCuACGUuggaggagGCGGCgGCGGCCGCgGCggCCg -3'
miRNA:   3'- -UCG-UGCA--------CGCCGaUGCCGGCGgCG--GG- -5'
14136 3' -63.3 NC_003521.1 + 354 0.72 0.376086
Target:  5'- gAGCugcCGgagGCGGCgccUGCGaCCGCUGCCCg -3'
miRNA:   3'- -UCGu--GCa--CGCCG---AUGCcGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 240622 0.72 0.376086
Target:  5'- cGGCgGCGUGCGGCg--GGCCGgCCGgUCg -3'
miRNA:   3'- -UCG-UGCACGCCGaugCCGGC-GGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 147800 0.72 0.376086
Target:  5'- --aGgGUGCGGCUACGGCgGCuagaCGCCa -3'
miRNA:   3'- ucgUgCACGCCGAUGCCGgCG----GCGGg -5'
14136 3' -63.3 NC_003521.1 + 89736 0.72 0.376086
Target:  5'- gGGCACGgggGCGGUgACGGCaGCCGgCg -3'
miRNA:   3'- -UCGUGCa--CGCCGaUGCCGgCGGCgGg -5'
14136 3' -63.3 NC_003521.1 + 197183 0.72 0.368575
Target:  5'- uGCucuc-CGGCgGCGGCCGCCGCCUc -3'
miRNA:   3'- uCGugcacGCCGaUGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 150653 0.72 0.376086
Target:  5'- uGCGCGacgaagGCGGCUcuccgGCGGCggCGCCGCUg -3'
miRNA:   3'- uCGUGCa-----CGCCGA-----UGCCG--GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 166769 0.71 0.439768
Target:  5'- cGGCGCGUGagcucgggacaGGCggggucggACGauGCCGCCGCCg -3'
miRNA:   3'- -UCGUGCACg----------CCGa-------UGC--CGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 92018 0.71 0.439768
Target:  5'- aGGCGCG-GCGGCgGCGGCgGUgGgUCCg -3'
miRNA:   3'- -UCGUGCaCGCCGaUGCCGgCGgC-GGG- -5'
14136 3' -63.3 NC_003521.1 + 136782 0.71 0.399232
Target:  5'- uGCGCGacaGCgGGCUcACGGUcaCGCUGCCCg -3'
miRNA:   3'- uCGUGCa--CG-CCGA-UGCCG--GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 144091 0.71 0.399232
Target:  5'- uGCugGgcuucugccucaUGCGGCUGCuGGaCCGCCGCggCCu -3'
miRNA:   3'- uCGugC------------ACGCCGAUG-CC-GGCGGCG--GG- -5'
14136 3' -63.3 NC_003521.1 + 123378 0.71 0.410341
Target:  5'- cGCACcgacagGCGGCUAgucaGGCCgcgcggacccgagauGCCGCCCu -3'
miRNA:   3'- uCGUGca----CGCCGAUg---CCGG---------------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 3624 0.71 0.407148
Target:  5'- aAGgAUGUuguuguucucuaGCGuGCcACGGCCGCCGCCg -3'
miRNA:   3'- -UCgUGCA------------CGC-CGaUGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 22588 0.71 0.407148
Target:  5'- cGCAccCGUGaCGGCcccUGCGGUCGCCugaccuccguuGCCCg -3'
miRNA:   3'- uCGU--GCAC-GCCG---AUGCCGGCGG-----------CGGG- -5'
14136 3' -63.3 NC_003521.1 + 28854 0.71 0.407148
Target:  5'- gAGCuGCG-GCGGC-GCGGCacggucgaGUCGCCCa -3'
miRNA:   3'- -UCG-UGCaCGCCGaUGCCGg-------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 128528 0.71 0.439768
Target:  5'- gGGCAgGUGCGGCU--GGCCcgacgucagGUgGCCCu -3'
miRNA:   3'- -UCGUgCACGCCGAugCCGG---------CGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 226896 0.71 0.407148
Target:  5'- gGGCACcacgGCGGCcagcGCGGCCuccGCgGCCCc -3'
miRNA:   3'- -UCGUGca--CGCCGa---UGCCGG---CGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 149049 0.71 0.439768
Target:  5'- aGGC-CGUGCccgcgcugGGCUucgacGCGGCCGCgcucucgcaCGCCCu -3'
miRNA:   3'- -UCGuGCACG--------CCGA-----UGCCGGCG---------GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.