miRNA display CGI


Results 81 - 100 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 226071 0.72 0.361167
Target:  5'- aGGCGCGcccCGGCcGCGGCCGgcccgucaCGCCCa -3'
miRNA:   3'- -UCGUGCac-GCCGaUGCCGGCg-------GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 167400 0.72 0.361167
Target:  5'- gGGCACGcuagugGgGGCgcuuCGGCUGCUGUCCu -3'
miRNA:   3'- -UCGUGCa-----CgCCGau--GCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 35470 0.72 0.361167
Target:  5'- cAGguCGUGCacGGCgcaGCuGCCGCCGCCg -3'
miRNA:   3'- -UCguGCACG--CCGa--UGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 134215 0.72 0.366341
Target:  5'- cGCugGUGCcGCU-UGGCCgaguagcugcccgcGCCGCCCu -3'
miRNA:   3'- uCGugCACGcCGAuGCCGG--------------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 14201 0.72 0.368575
Target:  5'- aAGCugGUGU-GCUGCGGCgagccccugaCGCCGCUg -3'
miRNA:   3'- -UCGugCACGcCGAUGCCG----------GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 75124 0.72 0.368575
Target:  5'- cGCACGgugGaCGGCUuuCGGCgGCCGaCCUg -3'
miRNA:   3'- uCGUGCa--C-GCCGAu-GCCGgCGGC-GGG- -5'
14136 3' -63.3 NC_003521.1 + 149746 0.72 0.368575
Target:  5'- uGGCAgGUcuucuGCGGCgaggGCGGCCGCgcgguaCGCCUc -3'
miRNA:   3'- -UCGUgCA-----CGCCGa---UGCCGGCG------GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 78138 0.72 0.368575
Target:  5'- gGGCGCGUuaGCGGCgGCGGCCGCgaacgaggcaCGaUCCu -3'
miRNA:   3'- -UCGUGCA--CGCCGaUGCCGGCG----------GC-GGG- -5'
14136 3' -63.3 NC_003521.1 + 197183 0.72 0.368575
Target:  5'- uGCucuc-CGGCgGCGGCCGCCGCCUc -3'
miRNA:   3'- uCGugcacGCCGaUGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 127419 0.72 0.371567
Target:  5'- cAGCGCGUucacguaggccgccaGCGGCUcguCGGCCaGCUGgCCg -3'
miRNA:   3'- -UCGUGCA---------------CGCCGAu--GCCGG-CGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 200301 0.72 0.376086
Target:  5'- cGGCgGCGUGCGGCg--GGCCGgCCGgUCg -3'
miRNA:   3'- -UCG-UGCACGCCGaugCCGGC-GGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 73 0.72 0.376086
Target:  5'- cGGCgGCGUGCGGCg--GGCCGgCCGgUCg -3'
miRNA:   3'- -UCG-UGCACGCCGaugCCGGC-GGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 147800 0.72 0.376086
Target:  5'- --aGgGUGCGGCUACGGCgGCuagaCGCCa -3'
miRNA:   3'- ucgUgCACGCCGAUGCCGgCG----GCGGg -5'
14136 3' -63.3 NC_003521.1 + 89736 0.72 0.376086
Target:  5'- gGGCACGgggGCGGUgACGGCaGCCGgCg -3'
miRNA:   3'- -UCGUGCa--CGCCGaUGCCGgCGGCgGg -5'
14136 3' -63.3 NC_003521.1 + 60668 0.72 0.376086
Target:  5'- gGGCACGaUGCucuucguGCUGCGGCCGCgCGggggaCCCg -3'
miRNA:   3'- -UCGUGC-ACGc------CGAUGCCGGCG-GC-----GGG- -5'
14136 3' -63.3 NC_003521.1 + 354 0.72 0.376086
Target:  5'- gAGCugcCGgagGCGGCgccUGCGaCCGCUGCCCg -3'
miRNA:   3'- -UCGu--GCa--CGCCG---AUGCcGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 240622 0.72 0.376086
Target:  5'- cGGCgGCGUGCGGCg--GGCCGgCCGgUCg -3'
miRNA:   3'- -UCG-UGCACGCCGaugCCGGC-GGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 150653 0.72 0.376086
Target:  5'- uGCGCGacgaagGCGGCUcuccgGCGGCggCGCCGCUg -3'
miRNA:   3'- uCGUGCa-----CGCCGA-----UGCCG--GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 130943 0.72 0.376086
Target:  5'- cGCACGcaguuacugGUGGCccc-GCCGCCGCCCg -3'
miRNA:   3'- uCGUGCa--------CGCCGaugcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 87615 0.72 0.3837
Target:  5'- uAGCAgGUGUGGCaGCagguGCCGCCGCa- -3'
miRNA:   3'- -UCGUgCACGCCGaUGc---CGGCGGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.