Results 101 - 120 of 535 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14136 | 3' | -63.3 | NC_003521.1 | + | 87615 | 0.72 | 0.3837 |
Target: 5'- uAGCAgGUGUGGCaGCagguGCCGCCGCa- -3' miRNA: 3'- -UCGUgCACGCCGaUGc---CGGCGGCGgg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 16239 | 0.72 | 0.386775 |
Target: 5'- gAGUGCGaaauguaccucagccUGCGGCUGC-GCUGCCGCUg -3' miRNA: 3'- -UCGUGC---------------ACGCCGAUGcCGGCGGCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 74183 | 0.72 | 0.391416 |
Target: 5'- uGCGCc-GCGGCgccCGGCgCGCgGCCCg -3' miRNA: 3'- uCGUGcaCGCCGau-GCCG-GCGgCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 138023 | 0.72 | 0.391416 |
Target: 5'- uGCGCGUGCGucGCUGCcggcgcacggGGCUguggGUCGCCCg -3' miRNA: 3'- uCGUGCACGC--CGAUG----------CCGG----CGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 70650 | 0.72 | 0.391416 |
Target: 5'- cGCACGcUGCGGCUggugcuGCaGCUGCUGCUg -3' miRNA: 3'- uCGUGC-ACGCCGA------UGcCGGCGGCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 186860 | 0.72 | 0.391416 |
Target: 5'- cGGCgGCGUGCaGC-ACGGCuCGUCgGCCCa -3' miRNA: 3'- -UCG-UGCACGcCGaUGCCG-GCGG-CGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 74932 | 0.72 | 0.391416 |
Target: 5'- cAGCGCGggGUGGUguac-CCGCCGCCCg -3' miRNA: 3'- -UCGUGCa-CGCCGaugccGGCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 108952 | 0.72 | 0.391416 |
Target: 5'- cGaCACGcGCGGCacgAUGGCCgugGCCGCCUu -3' miRNA: 3'- uC-GUGCaCGCCGa--UGCCGG---CGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 164442 | 0.72 | 0.394531 |
Target: 5'- cAGCGCcaccGCGGCcGCGGCCgucacggucgccgcuGCCGCCg -3' miRNA: 3'- -UCGUGca--CGCCGaUGCCGG---------------CGGCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 136782 | 0.71 | 0.399232 |
Target: 5'- uGCGCGacaGCgGGCUcACGGUcaCGCUGCCCg -3' miRNA: 3'- uCGUGCa--CG-CCGA-UGCCG--GCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 144091 | 0.71 | 0.399232 |
Target: 5'- uGCugGgcuucugccucaUGCGGCUGCuGGaCCGCCGCggCCu -3' miRNA: 3'- uCGugC------------ACGCCGAUG-CC-GGCGGCG--GG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 3624 | 0.71 | 0.407148 |
Target: 5'- aAGgAUGUuguuguucucuaGCGuGCcACGGCCGCCGCCg -3' miRNA: 3'- -UCgUGCA------------CGC-CGaUGCCGGCGGCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 22588 | 0.71 | 0.407148 |
Target: 5'- cGCAccCGUGaCGGCcccUGCGGUCGCCugaccuccguuGCCCg -3' miRNA: 3'- uCGU--GCAC-GCCG---AUGCCGGCGG-----------CGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 28854 | 0.71 | 0.407148 |
Target: 5'- gAGCuGCG-GCGGC-GCGGCacggucgaGUCGCCCa -3' miRNA: 3'- -UCG-UGCaCGCCGaUGCCGg-------CGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 226896 | 0.71 | 0.407148 |
Target: 5'- gGGCACcacgGCGGCcagcGCGGCCuccGCgGCCCc -3' miRNA: 3'- -UCGUGca--CGCCGa---UGCCGG---CGgCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 14448 | 0.71 | 0.407148 |
Target: 5'- cGGC-CcUGCGGCgGCGucaGCCGCCGCUCc -3' miRNA: 3'- -UCGuGcACGCCGaUGC---CGGCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 110815 | 0.71 | 0.407148 |
Target: 5'- aAGCcaGCG-GCcGUUGCGcGCCGCCGCCg -3' miRNA: 3'- -UCG--UGCaCGcCGAUGC-CGGCGGCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 123378 | 0.71 | 0.410341 |
Target: 5'- cGCACcgacagGCGGCUAgucaGGCCgcgcggacccgagauGCCGCCCu -3' miRNA: 3'- uCGUGca----CGCCGAUg---CCGG---------------CGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 118533 | 0.71 | 0.412747 |
Target: 5'- aAGC-CGggauuccccacGCGGCUugGGCCGUaguauguaaguagaCGCCCa -3' miRNA: 3'- -UCGuGCa----------CGCCGAugCCGGCG--------------GCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 218629 | 0.71 | 0.415161 |
Target: 5'- cGCGCGgcgguaaGCGGCcACGGCCgGCgGCgCCu -3' miRNA: 3'- uCGUGCa------CGCCGaUGCCGG-CGgCG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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