miRNA display CGI


Results 121 - 140 of 535 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 174048 0.71 0.415161
Target:  5'- cGCACGUG-GGCUGCGaUCGCCucGUCCu -3'
miRNA:   3'- uCGUGCACgCCGAUGCcGGCGG--CGGG- -5'
14136 3' -63.3 NC_003521.1 + 218629 0.71 0.415161
Target:  5'- cGCGCGgcgguaaGCGGCcACGGCCgGCgGCgCCu -3'
miRNA:   3'- uCGUGCa------CGCCGaUGCCGG-CGgCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 153638 0.71 0.415161
Target:  5'- cAGCGgGUGCGucucgguggagcGCUgcACGGCCGCgcgcacgaacugCGCCCg -3'
miRNA:   3'- -UCGUgCACGC------------CGA--UGCCGGCG------------GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 207144 0.71 0.415161
Target:  5'- cAGCguuACGUGCgGGCcACGGCCgGUCGCUg -3'
miRNA:   3'- -UCG---UGCACG-CCGaUGCCGG-CGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 53430 0.71 0.42327
Target:  5'- cGGCAagGUGCggaGGCUGuuGCCGCUGCUCa -3'
miRNA:   3'- -UCGUg-CACG---CCGAUgcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 196481 0.71 0.42327
Target:  5'- cAGCGCGUcGCGGaUGCGGUgcaGCuUGCCCa -3'
miRNA:   3'- -UCGUGCA-CGCCgAUGCCGg--CG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 170067 0.71 0.42327
Target:  5'- cAGCugGUGauCGGCcGCGGCgCGCUGCa- -3'
miRNA:   3'- -UCGugCAC--GCCGaUGCCG-GCGGCGgg -5'
14136 3' -63.3 NC_003521.1 + 125102 0.71 0.42327
Target:  5'- aGGCGC-UGCGGgaugggcaccACGGCCGCCGUCa -3'
miRNA:   3'- -UCGUGcACGCCga--------UGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 233056 0.71 0.42327
Target:  5'- aGGCuCGUcuGCGGCgucugcugggACuGCCGCCGCCUc -3'
miRNA:   3'- -UCGuGCA--CGCCGa---------UGcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 60782 0.71 0.431473
Target:  5'- cGGCAUGcUGCGGCUuuccgACGGUC-CCGUCUc -3'
miRNA:   3'- -UCGUGC-ACGCCGA-----UGCCGGcGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 35745 0.71 0.431473
Target:  5'- cAGcCACaUGCGGUUGCGGCUGgaCGCuCCa -3'
miRNA:   3'- -UC-GUGcACGCCGAUGCCGGCg-GCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 112750 0.71 0.431473
Target:  5'- cAGCGCGagcccauggGCGGCaucgGCGGCgCGUCGgCCa -3'
miRNA:   3'- -UCGUGCa--------CGCCGa---UGCCG-GCGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 206306 0.71 0.431473
Target:  5'- cGCGCGUcuCGGCccGCGGCCGCUaCCUg -3'
miRNA:   3'- uCGUGCAc-GCCGa-UGCCGGCGGcGGG- -5'
14136 3' -63.3 NC_003521.1 + 157958 0.71 0.431473
Target:  5'- aGGCugGgcgacGaCGGCgcugguaGCGacGCCGCCGCCCg -3'
miRNA:   3'- -UCGugCa----C-GCCGa------UGC--CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 73218 0.71 0.431473
Target:  5'- gAGCGCcUGCGGCgccuCuGCgCGCCGCUCu -3'
miRNA:   3'- -UCGUGcACGCCGau--GcCG-GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 122093 0.71 0.431473
Target:  5'- cAGCGacuuggucuCGUGCGGCUgcaGCGGCgucuCGCCGCg- -3'
miRNA:   3'- -UCGU---------GCACGCCGA---UGCCG----GCGGCGgg -5'
14136 3' -63.3 NC_003521.1 + 149294 0.71 0.438102
Target:  5'- aAGUACGUGCuGGagcgcgacgacGCGGCCGCCGUg- -3'
miRNA:   3'- -UCGUGCACG-CCga---------UGCCGGCGGCGgg -5'
14136 3' -63.3 NC_003521.1 + 169481 0.71 0.438935
Target:  5'- cGCGuCGUcguuggccaagaaGCGGCUGuauCGgacGCCGCCGCCCc -3'
miRNA:   3'- uCGU-GCA-------------CGCCGAU---GC---CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 149049 0.71 0.439768
Target:  5'- aGGC-CGUGCccgcgcugGGCUucgacGCGGCCGCgcucucgcaCGCCCu -3'
miRNA:   3'- -UCGuGCACG--------CCGA-----UGCCGGCG---------GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 128528 0.71 0.439768
Target:  5'- gGGCAgGUGCGGCU--GGCCcgacgucagGUgGCCCu -3'
miRNA:   3'- -UCGUgCACGCCGAugCCGG---------CGgCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.