miRNA display CGI


Results 81 - 100 of 535 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 88250 0.66 0.699417
Target:  5'- uAGCGCuuGUGCGGCgccagcuugaccgagUGCuGGCUGUCGUgCa -3'
miRNA:   3'- -UCGUG--CACGCCG---------------AUG-CCGGCGGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 145377 0.66 0.695699
Target:  5'- gGGCGCGaGcCGGUgcgcgACGGCCuggGCCuGCUCa -3'
miRNA:   3'- -UCGUGCaC-GCCGa----UGCCGG---CGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 157976 0.66 0.695699
Target:  5'- cGCAacaacaGGCUugGGCaccuccaccugUGCCGCCCg -3'
miRNA:   3'- uCGUgcacg-CCGAugCCG-----------GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 168421 0.66 0.695699
Target:  5'- uAGgGCGgGCGGC-AgGGCCGCgGCg- -3'
miRNA:   3'- -UCgUGCaCGCCGaUgCCGGCGgCGgg -5'
14136 3' -63.3 NC_003521.1 + 112233 0.66 0.695699
Target:  5'- cAGCA-GUGCGaggucgucgaGgUACuGCCGCCGUCCc -3'
miRNA:   3'- -UCGUgCACGC----------CgAUGcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 34512 0.66 0.695699
Target:  5'- cGCAgGUaGCGGCcGCgGGCCGagaCGCgCg -3'
miRNA:   3'- uCGUgCA-CGCCGaUG-CCGGCg--GCGgG- -5'
14136 3' -63.3 NC_003521.1 + 160337 0.66 0.695699
Target:  5'- cGGCGCG-GUGGCcuccgucgucgAgGGCguCGCCGCCUu -3'
miRNA:   3'- -UCGUGCaCGCCGa----------UgCCG--GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 184672 0.66 0.695699
Target:  5'- cGCGCGcaGCGaGCagcACGaGCCGCacuCGCCCg -3'
miRNA:   3'- uCGUGCa-CGC-CGa--UGC-CGGCG---GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 212050 0.66 0.695699
Target:  5'- gAGCGCagaaaGUGCaGCgcuaggGCGGUggCGCgGCCCg -3'
miRNA:   3'- -UCGUG-----CACGcCGa-----UGCCG--GCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 118921 0.66 0.695699
Target:  5'- cGGCGCc-GCGGCguggGCGGCgG-CGUCCc -3'
miRNA:   3'- -UCGUGcaCGCCGa---UGCCGgCgGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 224089 0.66 0.695699
Target:  5'- gGGCGCGcGCGccgGCGGUCGCCGaaCUCg -3'
miRNA:   3'- -UCGUGCaCGCcgaUGCCGGCGGC--GGG- -5'
14136 3' -63.3 NC_003521.1 + 145713 0.66 0.695699
Target:  5'- aGGcCACGcucaaGCGcGC-GCGGCCGCucaaggCGCCCg -3'
miRNA:   3'- -UC-GUGCa----CGC-CGaUGCCGGCG------GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 224602 0.66 0.695699
Target:  5'- cGCACucggccagGCGGCa--GGgCGCCGCCa -3'
miRNA:   3'- uCGUGca------CGCCGaugCCgGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 72532 0.66 0.695699
Target:  5'- gAGCuGCGgagGCGGCggcgACGGUguCGUCGUCUc -3'
miRNA:   3'- -UCG-UGCa--CGCCGa---UGCCG--GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 59648 0.66 0.695699
Target:  5'- cGUugGUGCGGCagACGcUgGCgCGCCUg -3'
miRNA:   3'- uCGugCACGCCGa-UGCcGgCG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 137245 0.66 0.695699
Target:  5'- gAGUACGUGCGcaGCUucugcGCGGgCGaCCuggGCCCc -3'
miRNA:   3'- -UCGUGCACGC--CGA-----UGCCgGC-GG---CGGG- -5'
14136 3' -63.3 NC_003521.1 + 97370 0.66 0.694768
Target:  5'- gAGCACGcgcugGCGGUcgaGCGGCCagaccucGCCgaaggaGCCCu -3'
miRNA:   3'- -UCGUGCa----CGCCGa--UGCCGG-------CGG------CGGG- -5'
14136 3' -63.3 NC_003521.1 + 148405 0.66 0.694768
Target:  5'- -cCACGUGCGagggagccaugguGCggGCGGCCG-CGCCg -3'
miRNA:   3'- ucGUGCACGC-------------CGa-UGCCGGCgGCGGg -5'
14136 3' -63.3 NC_003521.1 + 223091 0.66 0.694768
Target:  5'- cAGCgaACGUGCGuagaucuGCgggAUGGCgGCCGUCUc -3'
miRNA:   3'- -UCG--UGCACGC-------CGa--UGCCGgCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 206456 0.66 0.692906
Target:  5'- uGCugGUGCGcaacGCccaggaccugggccUcACGGCCuCCGCCCu -3'
miRNA:   3'- uCGugCACGC----CG--------------A-UGCCGGcGGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.