miRNA display CGI


Results 101 - 120 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 220194 0.66 0.690109
Target:  5'- cAGCGCGcgGCucuccgagcacaucuGGaagAUGGCCGCCGUCa -3'
miRNA:   3'- -UCGUGCa-CG---------------CCga-UGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 168364 0.66 0.690109
Target:  5'- cGGCGCGUaGCGGCagucgGCgggcaggauguagguGGCguUGCCGCCg -3'
miRNA:   3'- -UCGUGCA-CGCCGa----UG---------------CCG--GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 216912 0.66 0.686375
Target:  5'- gGGCGCG-GUGGCaGCggaGGCgGUCGaCCCc -3'
miRNA:   3'- -UCGUGCaCGCCGaUG---CCGgCGGC-GGG- -5'
14136 3' -63.3 NC_003521.1 + 69208 0.66 0.686375
Target:  5'- --gACGUcgGCGGC-ACucccGCCGCCGCUCg -3'
miRNA:   3'- ucgUGCA--CGCCGaUGc---CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 234733 0.66 0.686375
Target:  5'- uAGC-CGUgGCGGa-AC-GCCGCCGCaCCg -3'
miRNA:   3'- -UCGuGCA-CGCCgaUGcCGGCGGCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 235286 0.66 0.686375
Target:  5'- --gGCG-GCGGCcgcgcCGGCUGCCGUCa -3'
miRNA:   3'- ucgUGCaCGCCGau---GCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 188488 0.66 0.686375
Target:  5'- aGGC-CGUG-GGCcugGGuCCGCCGCCg -3'
miRNA:   3'- -UCGuGCACgCCGaugCC-GGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 126567 0.66 0.686375
Target:  5'- aGGC-CGUG-GGCaGCGggaaGCCGCCGUCg -3'
miRNA:   3'- -UCGuGCACgCCGaUGC----CGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 187580 0.66 0.686375
Target:  5'- aAGUccGCG-GgGGCUucgccgGCGGUCGCuuCGCCCg -3'
miRNA:   3'- -UCG--UGCaCgCCGA------UGCCGGCG--GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 168936 0.66 0.686375
Target:  5'- gGGCGCa---GGC-AgGGCCGCCGCUg -3'
miRNA:   3'- -UCGUGcacgCCGaUgCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 80007 0.66 0.686375
Target:  5'- gGGCuuGgGCGGCUucugcuGCGGCUGCUGUUUc -3'
miRNA:   3'- -UCGugCaCGCCGA------UGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 149658 0.66 0.686375
Target:  5'- -cCugGUGCgGGCUGCccgacaucgugGGCC-CCGCCg -3'
miRNA:   3'- ucGugCACG-CCGAUG-----------CCGGcGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 128912 0.66 0.686375
Target:  5'- cGCugGaUGCGGUUGagGGCCugGCgCGCCa -3'
miRNA:   3'- uCGugC-ACGCCGAUg-CCGG--CG-GCGGg -5'
14136 3' -63.3 NC_003521.1 + 111505 0.66 0.686375
Target:  5'- cAGCGgGcugGCGGCgGCGGC-GCaCGCCa -3'
miRNA:   3'- -UCGUgCa--CGCCGaUGCCGgCG-GCGGg -5'
14136 3' -63.3 NC_003521.1 + 139440 0.66 0.686375
Target:  5'- uGGC-CGUcaaGCGGCgcgACGGCuCGCgCaCCCg -3'
miRNA:   3'- -UCGuGCA---CGCCGa--UGCCG-GCG-GcGGG- -5'
14136 3' -63.3 NC_003521.1 + 117158 0.66 0.68544
Target:  5'- cAGCGCGc-CGGCUcccuccaagccuaACccgccgucgcuGCCGCCGCCCg -3'
miRNA:   3'- -UCGUGCacGCCGA-------------UGc----------CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 181729 0.66 0.677012
Target:  5'- cGCGCGcacGCuGGCcaaGCGGCCGCgCGaUCCg -3'
miRNA:   3'- uCGUGCa--CG-CCGa--UGCCGGCG-GC-GGG- -5'
14136 3' -63.3 NC_003521.1 + 145864 0.66 0.677012
Target:  5'- gGGCcCG-GCGGCggGCGGCgCcgacgacgagGCCGCCg -3'
miRNA:   3'- -UCGuGCaCGCCGa-UGCCG-G----------CGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 141301 0.66 0.677012
Target:  5'- uGCAgGUGCGG--GCGGC-GCCccggaGCCCu -3'
miRNA:   3'- uCGUgCACGCCgaUGCCGgCGG-----CGGG- -5'
14136 3' -63.3 NC_003521.1 + 118582 0.66 0.677012
Target:  5'- cAGCgACGUgGCGGCgcuCaGUCGCCGgcaCCCg -3'
miRNA:   3'- -UCG-UGCA-CGCCGau-GcCGGCGGC---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.