miRNA display CGI


Results 61 - 80 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 36766 0.66 0.723372
Target:  5'- uGGUGCGacUGCGGCgacugGCagGGCCacgcgcugcggaGCCGCUCg -3'
miRNA:   3'- -UCGUGC--ACGCCGa----UG--CCGG------------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 37474 0.67 0.648763
Target:  5'- aGGCGUGUGUGGacGCGGuCUGCCcCCCg -3'
miRNA:   3'- -UCGUGCACGCCgaUGCC-GGCGGcGGG- -5'
14136 3' -63.3 NC_003521.1 + 38224 0.67 0.616633
Target:  5'- aGGCGCaggGCGGCcucggcgggcgggGCGGagaCGCgGCCCa -3'
miRNA:   3'- -UCGUGca-CGCCGa------------UGCCg--GCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 38295 0.69 0.552012
Target:  5'- cAGCAgGUGCGagaGCUcguCGGCCagcggguagaggugGCCGUCCu -3'
miRNA:   3'- -UCGUgCACGC---CGAu--GCCGG--------------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 38382 0.67 0.667618
Target:  5'- uAGCAgG-GCcugGGCgUAgGGCCgGCCGUCCg -3'
miRNA:   3'- -UCGUgCaCG---CCG-AUgCCGG-CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 39001 0.68 0.564066
Target:  5'- aGGUAgGUGUcgaGGCcggaGCGGgCGCCGCCg -3'
miRNA:   3'- -UCGUgCACG---CCGa---UGCCgGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 39882 0.66 0.732472
Target:  5'- uGCACGuUGgGGUggGCGuGCgGUCGUCCc -3'
miRNA:   3'- uCGUGC-ACgCCGa-UGC-CGgCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 42613 0.67 0.667618
Target:  5'- cGGC-CGccgGCGGC-GCcGUCGCCGCCa -3'
miRNA:   3'- -UCGuGCa--CGCCGaUGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 42790 0.7 0.482549
Target:  5'- uGCcCGUGCaGCccgGCGGCUGCaCGCgCCg -3'
miRNA:   3'- uCGuGCACGcCGa--UGCCGGCG-GCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 43477 0.73 0.325702
Target:  5'- cAGCGCG-GCGGCcgUGCuGGCCGCgGCggCCa -3'
miRNA:   3'- -UCGUGCaCGCCG--AUG-CCGGCGgCG--GG- -5'
14136 3' -63.3 NC_003521.1 + 43628 0.74 0.29289
Target:  5'- gAGgACGagGaggaGGCgGCGGCCGCCGCCg -3'
miRNA:   3'- -UCgUGCa-Cg---CCGaUGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 43860 0.72 0.346664
Target:  5'- aGGCGCcccgGcCGGCUcccgGGCCGUCGCCCa -3'
miRNA:   3'- -UCGUGca--C-GCCGAug--CCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 44301 0.67 0.620411
Target:  5'- gAGCugG-GCGgguuGCUGUGGCCGCUGCg- -3'
miRNA:   3'- -UCGugCaCGC----CGAUGCCGGCGGCGgg -5'
14136 3' -63.3 NC_003521.1 + 44361 0.77 0.182938
Target:  5'- cGCGC-UGgGGCUGCGGCC-CaCGCCCg -3'
miRNA:   3'- uCGUGcACgCCGAUGCCGGcG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 44384 0.66 0.72702
Target:  5'- cGCGCGgcaGcCGGCcgacccggGCGacagcgacugucuguGCCGCUGCCCg -3'
miRNA:   3'- uCGUGCa--C-GCCGa-------UGC---------------CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 44485 0.66 0.677012
Target:  5'- uGCACGcGCuggaaaucGaGCUGCaGCCGCCGUCg -3'
miRNA:   3'- uCGUGCaCG--------C-CGAUGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 47634 0.67 0.648763
Target:  5'- cGGC-CGUGaCGGCggcucugGCGGCaGCUGCgCa -3'
miRNA:   3'- -UCGuGCAC-GCCGa------UGCCGgCGGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 47997 0.68 0.601538
Target:  5'- cGGaCGCGccGCcgGGCUucuGCGGCUGCUGCCa -3'
miRNA:   3'- -UC-GUGCa-CG--CCGA---UGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 49575 0.7 0.465186
Target:  5'- uGcCGCGUG-GGCcGCGG-CGCCGCCUc -3'
miRNA:   3'- uC-GUGCACgCCGaUGCCgGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 49894 0.67 0.658199
Target:  5'- cGUGCGUGUGGCgACGGCaGCCaUCUu -3'
miRNA:   3'- uCGUGCACGCCGaUGCCGgCGGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.