miRNA display CGI


Results 101 - 120 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 65355 0.69 0.518169
Target:  5'- cAGgACGUGCuGUccggggagACGGCgCGCCGCCg -3'
miRNA:   3'- -UCgUGCACGcCGa-------UGCCG-GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 66392 0.67 0.648763
Target:  5'- cAGCGCGUGCGugaaacGCUGCa-CCGCCugaGCCa -3'
miRNA:   3'- -UCGUGCACGC------CGAUGccGGCGG---CGGg -5'
14136 3' -63.3 NC_003521.1 + 66581 0.66 0.732472
Target:  5'- cGCaACGUGCGucugaGCUccgACGcGCCcCUGCCCg -3'
miRNA:   3'- uCG-UGCACGC-----CGA---UGC-CGGcGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 68241 0.67 0.619467
Target:  5'- cGGUACGUucaccugGCGG-UGCGaCCGCCGaCCCc -3'
miRNA:   3'- -UCGUGCA-------CGCCgAUGCcGGCGGC-GGG- -5'
14136 3' -63.3 NC_003521.1 + 68538 0.7 0.473828
Target:  5'- cGgACG-GCGGCaGCGGCCGCCaaCUa -3'
miRNA:   3'- uCgUGCaCGCCGaUGCCGGCGGcgGG- -5'
14136 3' -63.3 NC_003521.1 + 69208 0.66 0.686375
Target:  5'- --gACGUcgGCGGC-ACucccGCCGCCGCUCg -3'
miRNA:   3'- ucgUGCA--CGCCGaUGc---CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 70077 0.66 0.72702
Target:  5'- cAGCACGUacaGCGGguugccgcagggcacCUGgcCGGCgUGCCGCCg -3'
miRNA:   3'- -UCGUGCA---CGCC---------------GAU--GCCG-GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 70139 0.66 0.732472
Target:  5'- gGGCcuCGagcUGCGGCgagcGCGGCUGCCuaUCa -3'
miRNA:   3'- -UCGu-GC---ACGCCGa---UGCCGGCGGcgGG- -5'
14136 3' -63.3 NC_003521.1 + 70269 0.68 0.601538
Target:  5'- cAGCACGgGCaGGCgcaGGUCGgCGCCg -3'
miRNA:   3'- -UCGUGCaCG-CCGaugCCGGCgGCGGg -5'
14136 3' -63.3 NC_003521.1 + 70650 0.72 0.391416
Target:  5'- cGCACGcUGCGGCUggugcuGCaGCUGCUGCUg -3'
miRNA:   3'- uCGUGC-ACGCCGA------UGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 72393 0.67 0.620411
Target:  5'- -uCACGcccGCcGCcGCGGCCcuGCCGCCCg -3'
miRNA:   3'- ucGUGCa--CGcCGaUGCCGG--CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 72532 0.66 0.695699
Target:  5'- gAGCuGCGgagGCGGCggcgACGGUguCGUCGUCUc -3'
miRNA:   3'- -UCG-UGCa--CGCCGa---UGCCG--GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 73135 0.74 0.286646
Target:  5'- uGCACGgcgggggcaGCGGCgGCGG-CGCCGCCUc -3'
miRNA:   3'- uCGUGCa--------CGCCGaUGCCgGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 73218 0.71 0.431473
Target:  5'- gAGCGCcUGCGGCgccuCuGCgCGCCGCUCu -3'
miRNA:   3'- -UCGUGcACGCCGau--GcCG-GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 73623 0.66 0.674197
Target:  5'- cGGCGCGccUGCcagcccaagcagaaGGCcuccgccGCGGCCGCCuccaagacGCCCg -3'
miRNA:   3'- -UCGUGC--ACG--------------CCGa------UGCCGGCGG--------CGGG- -5'
14136 3' -63.3 NC_003521.1 + 73942 0.67 0.627027
Target:  5'- cGCGCGcccGCGGacuugauguacgacCUGCGcCCGCCGCgCCa -3'
miRNA:   3'- uCGUGCa--CGCC--------------GAUGCcGGCGGCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 74183 0.72 0.391416
Target:  5'- uGCGCc-GCGGCgccCGGCgCGCgGCCCg -3'
miRNA:   3'- uCGUGcaCGCCGau-GCCG-GCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 74351 0.75 0.23512
Target:  5'- uGGCGCugcugcGCGGCUACGGCCagugcggcgacgGCuCGCCCu -3'
miRNA:   3'- -UCGUGca----CGCCGAUGCCGG------------CG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 74473 0.69 0.554787
Target:  5'- gAGCACGUccugGGCUuCGaGCUgguGCCGCCCu -3'
miRNA:   3'- -UCGUGCAcg--CCGAuGC-CGG---CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 74564 0.68 0.573386
Target:  5'- uGCGCGUGCccgugaGC-ACGGcCCGCuCGCCg -3'
miRNA:   3'- uCGUGCACGc-----CGaUGCC-GGCG-GCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.