miRNA display CGI


Results 121 - 140 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 74590 0.73 0.305696
Target:  5'- cGGCGCGgcgucccGCGGCcgGCGcgccucGCCGCCGCgCCa -3'
miRNA:   3'- -UCGUGCa------CGCCGa-UGC------CGGCGGCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 74697 0.67 0.629862
Target:  5'- cAGCgACG-GCGGCgccGCGGCaGCgGCUCc -3'
miRNA:   3'- -UCG-UGCaCGCCGa--UGCCGgCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 74932 0.72 0.391416
Target:  5'- cAGCGCGggGUGGUguac-CCGCCGCCCg -3'
miRNA:   3'- -UCGUGCa-CGCCGaugccGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 75063 0.73 0.312259
Target:  5'- cGGCACGaUGaugGGCaaGCcGCCGCCGCCCu -3'
miRNA:   3'- -UCGUGC-ACg--CCGa-UGcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 75124 0.72 0.368575
Target:  5'- cGCACGgugGaCGGCUuuCGGCgGCCGaCCUg -3'
miRNA:   3'- uCGUGCa--C-GCCGAu-GCCGgCGGC-GGG- -5'
14136 3' -63.3 NC_003521.1 + 75550 0.68 0.582742
Target:  5'- cGGCGcCGgcgGCGGCUAC-GCCaGC-GCCCu -3'
miRNA:   3'- -UCGU-GCa--CGCCGAUGcCGG-CGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 76257 0.67 0.629862
Target:  5'- aGGCGCGagaGGCgcACGGCCGCCuGCg- -3'
miRNA:   3'- -UCGUGCacgCCGa-UGCCGGCGG-CGgg -5'
14136 3' -63.3 NC_003521.1 + 76360 0.75 0.262717
Target:  5'- cGGCgGCGgcaGCGGCgaccgugACGGCCGCgGCCg -3'
miRNA:   3'- -UCG-UGCa--CGCCGa------UGCCGGCGgCGGg -5'
14136 3' -63.3 NC_003521.1 + 76497 0.67 0.629862
Target:  5'- gGGaCGCGUgGCGGCUgugACuGCUGCUGCUg -3'
miRNA:   3'- -UC-GUGCA-CGCCGA---UGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 76535 0.66 0.704978
Target:  5'- uGGC---UGCuGCUGCGGUgGCUGUCCa -3'
miRNA:   3'- -UCGugcACGcCGAUGCCGgCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 77036 0.68 0.608137
Target:  5'- aGGC-CG-GCGGUggugGCGccgcuaccguuguuGCCGCCGCCg -3'
miRNA:   3'- -UCGuGCaCGCCGa---UGC--------------CGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 77454 0.66 0.732472
Target:  5'- cGUugGUGCccGUgacACuGCCGCCGCCg -3'
miRNA:   3'- uCGugCACGc-CGa--UGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 78138 0.72 0.368575
Target:  5'- gGGCGCGUuaGCGGCgGCGGCCGCgaacgaggcaCGaUCCu -3'
miRNA:   3'- -UCGUGCA--CGCCGaUGCCGGCG----------GC-GGG- -5'
14136 3' -63.3 NC_003521.1 + 78188 0.66 0.732472
Target:  5'- uGGCgaaacgGCGUGCGGa-GCGGgCGCggCGCUCg -3'
miRNA:   3'- -UCG------UGCACGCCgaUGCCgGCG--GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 78460 0.66 0.720628
Target:  5'- gAGCgaccgaagACGgGgGGCUGCGcgcccacgcccgcaGUCGCCGCCUg -3'
miRNA:   3'- -UCG--------UGCaCgCCGAUGC--------------CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 80007 0.66 0.686375
Target:  5'- gGGCuuGgGCGGCUucugcuGCGGCUGCUGUUUc -3'
miRNA:   3'- -UCGugCaCGCCGA------UGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 80865 0.66 0.732472
Target:  5'- aGGCugGguaGCuGGCacuccucggUGCGGUgGuuGCCCa -3'
miRNA:   3'- -UCGugCa--CG-CCG---------AUGCCGgCggCGGG- -5'
14136 3' -63.3 NC_003521.1 + 82844 0.67 0.664794
Target:  5'- cGcCGCGgGCGGCgGCGucgcuaccagcgccGUCGUCGCCCa -3'
miRNA:   3'- uC-GUGCaCGCCGaUGC--------------CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 83495 0.72 0.353863
Target:  5'- uGCcCGUaGCGGCUGCGGUagaugaaGCCGUUCa -3'
miRNA:   3'- uCGuGCA-CGCCGAUGCCGg------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 83933 0.67 0.648763
Target:  5'- cGCccccCGUGCcaucgGGCaGCGGCCGCCGgauuUCCu -3'
miRNA:   3'- uCGu---GCACG-----CCGaUGCCGGCGGC----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.