miRNA display CGI


Results 41 - 60 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 214815 0.7 0.471227
Target:  5'- gGGCGcCGggcGCGGCgACGGCgguuccaugcuguuUGCUGCCCg -3'
miRNA:   3'- -UCGU-GCa--CGCCGaUGCCG--------------GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 214183 0.68 0.601538
Target:  5'- gGGCAguuCG-GUGGCaACGuGCCGCaCGUCCu -3'
miRNA:   3'- -UCGU---GCaCGCCGaUGC-CGGCG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 213610 0.66 0.677012
Target:  5'- aGGC-UGuUGgGGUgGCGGUCGCCGCgCa -3'
miRNA:   3'- -UCGuGC-ACgCCGaUGCCGGCGGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 213302 0.66 0.732472
Target:  5'- cGCcacCGUG-GGCgccucgGGCCGCaCGCCCc -3'
miRNA:   3'- uCGu--GCACgCCGaug---CCGGCG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 213118 0.68 0.592127
Target:  5'- cGCGCuggGUGUGGCguggUGCGGCCGCaGCg- -3'
miRNA:   3'- uCGUG---CACGCCG----AUGCCGGCGgCGgg -5'
14136 3' -63.3 NC_003521.1 + 212664 0.72 0.361167
Target:  5'- gAGgGCGUcGCGGgcAUGGUCGCCGCCg -3'
miRNA:   3'- -UCgUGCA-CGCCgaUGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 212050 0.66 0.695699
Target:  5'- gAGCGCagaaaGUGCaGCgcuaggGCGGUggCGCgGCCCg -3'
miRNA:   3'- -UCGUG-----CACGcCGa-----UGCCG--GCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 210363 0.69 0.554787
Target:  5'- gGGCAgGUGCGcGUcauCGGCacccucgGCCGCCUg -3'
miRNA:   3'- -UCGUgCACGC-CGau-GCCGg------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 209724 0.7 0.491347
Target:  5'- uGCGCc-GCGuGUacCGGCCGCCGCCg -3'
miRNA:   3'- uCGUGcaCGC-CGauGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 209118 0.73 0.332583
Target:  5'- cAGCACGcGCacaUGCuGCCGCCGCCCc -3'
miRNA:   3'- -UCGUGCaCGccgAUGcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 209083 0.67 0.667618
Target:  5'- cGguCGagGCGGCggagGCGGUgGCCGCg- -3'
miRNA:   3'- uCguGCa-CGCCGa---UGCCGgCGGCGgg -5'
14136 3' -63.3 NC_003521.1 + 208412 0.7 0.456628
Target:  5'- aGGC-CGUGCgccacgGGCUGCuGuGUCGCaCGCCCg -3'
miRNA:   3'- -UCGuGCACG------CCGAUG-C-CGGCG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 207935 0.68 0.610968
Target:  5'- gGGCACG-GCGGCagcaccgGCGGCgCgGgCGCCa -3'
miRNA:   3'- -UCGUGCaCGCCGa------UGCCG-G-CgGCGGg -5'
14136 3' -63.3 NC_003521.1 + 207583 0.66 0.708675
Target:  5'- uGGCGUGUGCcagcucaacgccGGCUgcaagauccgucuggGCGGCuCGCCGgCCu -3'
miRNA:   3'- -UCGUGCACG------------CCGA---------------UGCCG-GCGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 207343 0.68 0.563136
Target:  5'- gGGCGCGUcccucggGuCGGC-GCGGCCGgCCGacaCCg -3'
miRNA:   3'- -UCGUGCA-------C-GCCGaUGCCGGC-GGCg--GG- -5'
14136 3' -63.3 NC_003521.1 + 207144 0.71 0.415161
Target:  5'- cAGCguuACGUGCgGGCcACGGCCgGUCGCUg -3'
miRNA:   3'- -UCG---UGCACG-CCGaUGCCGG-CGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 207037 0.66 0.677012
Target:  5'- cAGCAguCG-GUGGCUG-GGCCGCagGCCg -3'
miRNA:   3'- -UCGU--GCaCGCCGAUgCCGGCGg-CGGg -5'
14136 3' -63.3 NC_003521.1 + 206588 0.68 0.610968
Target:  5'- -cCACGUcaagauccucuGCGGCgacACGGgCGCCGUCUa -3'
miRNA:   3'- ucGUGCA-----------CGCCGa--UGCCgGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 206456 0.66 0.692906
Target:  5'- uGCugGUGCGcaacGCccaggaccugggccUcACGGCCuCCGCCCu -3'
miRNA:   3'- uCGugCACGC----CG--------------A-UGCCGGcGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 206306 0.71 0.431473
Target:  5'- cGCGCGUcuCGGCccGCGGCCGCUaCCUg -3'
miRNA:   3'- uCGUGCAc-GCCGa-UGCCGGCGGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.