miRNA display CGI


Results 101 - 120 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 182402 0.68 0.601538
Target:  5'- cAGCGC-UGCGGCUuCGucaaCCGCCGCa- -3'
miRNA:   3'- -UCGUGcACGCCGAuGCc---GGCGGCGgg -5'
14136 3' -63.3 NC_003521.1 + 182083 0.68 0.573386
Target:  5'- cAGCcCGcaGUGGCUGCugcaCCGCCGCCUg -3'
miRNA:   3'- -UCGuGCa-CGCCGAUGcc--GGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 181729 0.66 0.677012
Target:  5'- cGCGCGcacGCuGGCcaaGCGGCCGCgCGaUCCg -3'
miRNA:   3'- uCGUGCa--CG-CCGa--UGCCGGCG-GC-GGG- -5'
14136 3' -63.3 NC_003521.1 + 181455 0.74 0.29924
Target:  5'- uGCGCGgcguccaGCGGCU--GGCgCGCCGCCUg -3'
miRNA:   3'- uCGUGCa------CGCCGAugCCG-GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 181388 0.66 0.723372
Target:  5'- gAGCuCGcUGcCGGCgGCGG-CGCCGCUg -3'
miRNA:   3'- -UCGuGC-AC-GCCGaUGCCgGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 181191 0.72 0.346664
Target:  5'- cGCACcaacgccUGCGaGCcGCGGUCGCCGCCg -3'
miRNA:   3'- uCGUGc------ACGC-CGaUGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 180066 0.7 0.473828
Target:  5'- cGGCGgGgauucucccGCGGCgACuGCCGCCGCCg -3'
miRNA:   3'- -UCGUgCa--------CGCCGaUGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 179576 0.78 0.148133
Target:  5'- aGGCGCGUGUGGCgaaugaaguucUGCaGGCUGCCGCUg -3'
miRNA:   3'- -UCGUGCACGCCG-----------AUG-CCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 179379 0.78 0.159008
Target:  5'- cGCGCGUGCGGaugacCUGCaGCCGCuCGCUCa -3'
miRNA:   3'- uCGUGCACGCC-----GAUGcCGGCG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 178014 0.69 0.50916
Target:  5'- uAGgACGgagGCGGCcACGGUCGUCaaagacgccggGCCCg -3'
miRNA:   3'- -UCgUGCa--CGCCGaUGCCGGCGG-----------CGGG- -5'
14136 3' -63.3 NC_003521.1 + 177803 0.69 0.536369
Target:  5'- cGCugGUG-GGCgucgUGGgCGCCGCCg -3'
miRNA:   3'- uCGugCACgCCGau--GCCgGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 177744 0.69 0.536369
Target:  5'- cAGCGCGccgGCGcaGCUguacggggucGCGGUCGUCGCCa -3'
miRNA:   3'- -UCGUGCa--CGC--CGA----------UGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 177192 0.68 0.582742
Target:  5'- uGCGCGUGCGGUacuucuccagGCGGC-GCUGCa- -3'
miRNA:   3'- uCGUGCACGCCGa---------UGCCGgCGGCGgg -5'
14136 3' -63.3 NC_003521.1 + 175427 0.68 0.599654
Target:  5'- cGCGCGUcugagugGCGuGCUcggcguacgaucgGCGGCgCGCCGUCUc -3'
miRNA:   3'- uCGUGCA-------CGC-CGA-------------UGCCG-GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 174452 0.73 0.312259
Target:  5'- cGCugGUGUcGCUGCucGCCGCCGgCCa -3'
miRNA:   3'- uCGugCACGcCGAUGc-CGGCGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 174048 0.71 0.415161
Target:  5'- cGCACGUG-GGCUGCGaUCGCCucGUCCu -3'
miRNA:   3'- uCGUGCACgCCGAUGCcGGCGG--CGGG- -5'
14136 3' -63.3 NC_003521.1 + 173846 0.67 0.658199
Target:  5'- gAGCacuuGCGUGCcaGGCUGCGcucguccuGCCGCagCGCCa -3'
miRNA:   3'- -UCG----UGCACG--CCGAUGC--------CGGCG--GCGGg -5'
14136 3' -63.3 NC_003521.1 + 173239 0.66 0.677012
Target:  5'- -cCGCGUGUuggcgacucuGGCccGCGGggcCCGCCGCCUg -3'
miRNA:   3'- ucGUGCACG----------CCGa-UGCC---GGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 172764 0.66 0.676074
Target:  5'- cGGCAuucuggcugccacCG-GgGGCgccGCGGaccaCGCCGCCCg -3'
miRNA:   3'- -UCGU-------------GCaCgCCGa--UGCCg---GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 172386 0.66 0.714205
Target:  5'- cGGCACGcgguugaGgGGCgccgGCGgaGCCGUCGCCg -3'
miRNA:   3'- -UCGUGCa------CgCCGa---UGC--CGGCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.