miRNA display CGI


Results 41 - 60 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 44361 0.77 0.182938
Target:  5'- cGCGC-UGgGGCUGCGGCC-CaCGCCCg -3'
miRNA:   3'- uCGUGcACgCCGAUGCCGGcG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 200379 0.78 0.170598
Target:  5'- cGUACGUGUuucugcacGGCUcCGGCCGCCGCUUc -3'
miRNA:   3'- uCGUGCACG--------CCGAuGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 127536 0.78 0.166653
Target:  5'- gAGCAUGUGCGGCgGCaGCaCGCCGUCg -3'
miRNA:   3'- -UCGUGCACGCCGaUGcCG-GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 116874 0.78 0.159008
Target:  5'- cGCGCGcaguggcGCGGCUGCGGCgGCgCGCCg -3'
miRNA:   3'- uCGUGCa------CGCCGAUGCCGgCG-GCGGg -5'
14136 3' -63.3 NC_003521.1 + 138821 0.79 0.134688
Target:  5'- uGGCGCGccugauggcgGCGGCUACGGCCuGCgGCCa -3'
miRNA:   3'- -UCGUGCa---------CGCCGAUGCCGG-CGgCGGg -5'
14136 3' -63.3 NC_003521.1 + 117631 0.75 0.23512
Target:  5'- cGGCGCcguaUGCGGcCUACGGucccCCGCCGCCg -3'
miRNA:   3'- -UCGUGc---ACGCC-GAUGCC----GGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 196098 0.75 0.245309
Target:  5'- cAGCACGaaaUGCGGCgcGCGGuauagauCCGCCgGCCCg -3'
miRNA:   3'- -UCGUGC---ACGCCGa-UGCC-------GGCGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 117235 0.73 0.325702
Target:  5'- cGGcCGCG-GCGGCUcccgGC-GCCGCCGCCa -3'
miRNA:   3'- -UC-GUGCaCGCCGA----UGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 43477 0.73 0.325702
Target:  5'- cAGCGCG-GCGGCcgUGCuGGCCGCgGCggCCa -3'
miRNA:   3'- -UCGUGCaCGCCG--AUG-CCGGCGgCG--GG- -5'
14136 3' -63.3 NC_003521.1 + 129787 0.73 0.325702
Target:  5'- cGCACGUGCGcGCcgaGGCCGaCCGCg- -3'
miRNA:   3'- uCGUGCACGC-CGaugCCGGC-GGCGgg -5'
14136 3' -63.3 NC_003521.1 + 74590 0.73 0.305696
Target:  5'- cGGCGCGgcgucccGCGGCcgGCGcgccucGCCGCCGCgCCa -3'
miRNA:   3'- -UCGUGCa------CGCCGa-UGC------CGGCGGCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 43628 0.74 0.29289
Target:  5'- gAGgACGagGaggaGGCgGCGGCCGCCGCCg -3'
miRNA:   3'- -UCgUGCa-Cg---CCGaUGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 138453 0.74 0.289131
Target:  5'- cGCGCGUGCaucGCcgGCGGCgccacaucugccaccUGCCGCCCg -3'
miRNA:   3'- uCGUGCACGc--CGa-UGCCG---------------GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 73135 0.74 0.286646
Target:  5'- uGCACGgcgggggcaGCGGCgGCGG-CGCCGCCUc -3'
miRNA:   3'- uCGUGCa--------CGCCGaUGCCgGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 116762 0.74 0.280507
Target:  5'- uGGCuuGUGCaGCgugGGCCGCCGCCg -3'
miRNA:   3'- -UCGugCACGcCGaugCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 142351 0.74 0.274473
Target:  5'- cGcCACG-GCcGCcGCGGCCGCCGCCg -3'
miRNA:   3'- uC-GUGCaCGcCGaUGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 31713 0.75 0.262717
Target:  5'- cAGCAUGUGCGcguGCUgggacgccGCGGCCaCCGCCUc -3'
miRNA:   3'- -UCGUGCACGC---CGA--------UGCCGGcGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 58041 0.75 0.256995
Target:  5'- cGCGCGUGuuGCUGCuGGCgGCCaCCCg -3'
miRNA:   3'- uCGUGCACgcCGAUG-CCGgCGGcGGG- -5'
14136 3' -63.3 NC_003521.1 + 103261 0.75 0.251374
Target:  5'- cGCGCGUGCacuGCUGCucGGCCGgCGCCg -3'
miRNA:   3'- uCGUGCACGc--CGAUG--CCGGCgGCGGg -5'
14136 3' -63.3 NC_003521.1 + 134512 0.75 0.251374
Target:  5'- aGGCagGCGaUGC-GC-ACGGCCGCCGCCUg -3'
miRNA:   3'- -UCG--UGC-ACGcCGaUGCCGGCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.